suba logo
AT3G13860.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : heat shock protein 60-3A
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
heat shock protein 60-3A (HSP60-3A); FUNCTIONS IN: ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: mitochondrion, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Chaperonin Cpn60/TCP-1 (InterPro:IPR002423), Chaperonin Cpn60, conserved site (InterPro:IPR018370), Chaperonin Cpn60 (InterPro:IPR001844); BEST Arabidopsis thaliana protein match is: heat shock protein 60 (TAIR:AT3G23990.1); Has 33806 Blast hits to 33780 proteins in 8724 species: Archae - 691; Bacteria - 21872; Metazoa - 1598; Fungi - 1587; Plants - 751; Viruses - 2; Other Eukaryotes - 7305 (source: NCBI BLink).
Protein Annotations
BioGrid:5933eggNOG:COG0459eggNOG:KOG0356EMBL:AB028610
EMBL:AY056782EMBL:AY094453EMBL:BT015923EMBL:CP002686
EnsemblPlants:AT3G13860EnsemblPlants:AT3G13860.1entrez:820599Gene3D:1.10.560.10
Gene3D:3.50.7.10GeneID:820599Genevisible:Q93ZM7GO:GO:0005524
GO:GO:0005739GO:GO:0005774GO:GO:0042026GO:GO:0046686
Gramene:AT3G13860.1HAMAP:MF_00600hmmpanther:PTHR11353hmmpanther:PTHR11353:SF85
HOGENOM:HOG000076290InParanoid:Q93ZM7IntAct:Q93ZM7InterPro:IPR001844
InterPro:IPR002423InterPro:IPR018370InterPro:IPR027409InterPro:IPR027413
KEGG:ath:AT3G13860KO:K04077ncoils:CoilOMA:MKLSRGY
PaxDb:Q93ZM7Pfam:PF00118Pfam:Q93ZM7PhylomeDB:Q93ZM7
PRIDE:Q93ZM7PRINTS:PR00298PRO:PR:Q93ZM7PROSITE:PS00296
ProteinModelPortal:Q93ZM7Proteomes:UP000006548RefSeq:NP_566466.1scanprosite:PS00296
SMR:Q93ZM7STRING:3702.AT3G13860.1SUPFAM:SSF48592SUPFAM:SSF52029
SUPFAM:SSF54849TAIR:AT3G13860tair10-symbols:HSP60-3ATIGRfam:TIGR02348
TIGRFAMs:TIGR02348UniGene:At.8222UniProt:Q93ZM7
Coordinates (TAIR10) chr3:-:4561704..4565133
Molecular Weight (calculated) 60470.00 Da
IEP (calculated) 5.89
GRAVY (calculated) -0.02
Length 572 amino acids
Sequence (TAIR10)
(BLAST)
001: MYRVLSKLSS SIGSSTSRKL VSGRIISSRN YAAKDISFGI GARAAMLQGV SEVAEAVKVT MGPKGRNVII ESSYGGPKIT KDGVTVAKSI SFQAKAKNIG
101: AELVKQVASA TNKVAGDGTT CATVLTQAIL IEGCKSVAAG VNVMDLRVGI NMAIAAVVSD LKSRAVMIST PEEITQVATI SANGEREIGE LIARAMEKVG
201: KEGVITVADG NTLDNELEVV EGMKLARGYI SPYFITDEKT QKCELENPII LIHEKKISDI NSLLKVLEAA VKSSRPLLIV AEDVESDALA MLILNKHHGG
301: LKVCAIKAPG FGDNRKASLD DLAVLTGAEV ISEERGLSLE KIRPELLGTA KKVTVTRDDT IILHGGGDKK LIEERCEELR SANEKSTSTF DQEKTQERLS
401: KLSGGVAVFK VGGASESEVG ERKDRVTDAL NATRAAVEEG IIPGGGVALL YATKALDNLQ TENEDQRRGV QIVQNALKAP AFTIAANAGY DGSLVVGKLL
501: EQDDCNFGFD AAKGKYVDMV KAGIIDPVKV IRTALTDAAS VSLLLTTTEA SVLVKADENT PNHVPDMASM GM
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)