AT1G16870.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 ASURE: mitochondrion What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : mitochondrial 28S ribosomal protein S29-related | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
mitochondrial 28S ribosomal protein S29-related; CONTAINS InterPro DOMAIN/s: Ribosomal protein S23/S29, mitochondrial (InterPro:IPR019368); Has 239 Blast hits to 239 proteins in 116 species: Archae - 0; Bacteria - 0; Metazoa - 106; Fungi - 38; Plants - 38; Viruses - 0; Other Eukaryotes - 57 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:5770964..5773157 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 53786.40 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 9.28 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.42 | ||||||||||||||||||||||||||||
| Length | 480 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MWKYGLRIAA GNAKLNRKSS ILNNTVCHFS PPTSAAVGTL FPSLDHVHRC FSSSKSTKSS ITKTKKSEGK KSKPKGGDPG AAGAEEGEFG AAGGDDLEAG 101: RAKRLADDEK IPSLDVGPNG RPLFTPKDTT LSQLTHKDIG SYFKFDEAAL KAVLPEGLAS GIEDEFNESW RPALLVRKSY LALRDNFRRI ADPPMWPSDS 201: KGVKLQKQIV LDGPVKCGKS IALAMLVHWA RDEGWLVLYA PKGRDWTHGG YFYKNPHTGF WDTPLQAENI LKDFVKFNES RLRELRCKIH DPIVLGEGAG 301: VGYLKGADAM PIPEDSTLYD LVQMGIKSTH AAVNVVVRLR KELSVVKDVP VLIVIDQYNS WFTFSEFEEP VTPRSCRPIH ARELTTVNAF RSMMHEDMMV 401: GAFSHSTAVG KLRKDLPDVP VDARQQFPRY SLDEAEAVCY YYLRQRLVRR EVFNEENWKK IYYLANGNGA EMRWLAPFMR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)