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AT1G80620.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31911558 (2020): mitochondrion
  • PMID:31871212 (2020): mitochondrion
  • PMID:31818904 (2020): mitochondrion
  • PMID:31520498 (2020): mitochondrion
  • PMID:31023727 (2019): mitochondrion
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27943495 (2017): mitochondrion
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : S15/NS1, RNA-binding protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
S15/NS1, RNA-binding protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: small ribosomal subunit, ribosome, intracellular, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S15 (InterPro:IPR000589), Ribosomal protein S15, bacterial-type (InterPro:IPR005290), S15/NS1, RNA-binding (InterPro:IPR009068); BEST Arabidopsis thaliana protein match is: S15/NS1, RNA-binding protein (TAIR:AT1G15810.1); Has 7972 Blast hits to 7972 proteins in 2715 species: Archae - 0; Bacteria - 5433; Metazoa - 85; Fungi - 116; Plants - 310; Viruses - 0; Other Eukaryotes - 2028 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0184eggNOG:KOG2815EMBL:AC018849EMBL:CP002684
EnsemblPlants:AT1G80620EnsemblPlants:AT1G80620.1entrez:844401Gene3D:1.10.287.10
GeneID:844401GO:GO:0003735GO:GO:0005840GO:GO:0006412
Gramene:AT1G80620.1HAMAP:MF_01343_Bhmmpanther:PTHR23321hmmpanther:PTHR23321:SF26
HOGENOM:HOG000070921InterPro:IPR000589InterPro:IPR005290InterPro:IPR009068
KEGG:ath:AT1G80620ncoils:CoilOMA:ATTESKWPfam:PF00312
PhylomeDB:Q9M8M9PIR:D96838Proteomes:UP000006548RefSeq:NP_849914.1
SMART:SM01387SMR:Q9M8M9STRING:3702.AT1G80620.1SUPFAM:SSF47060
TAIR:AT1G80620TIGRfam:TIGR00952TIGRFAMs:TIGR00952UniGene:At.44637
UniProt:Q9M8M9
Coordinates (TAIR10) chr1:+:30305404..30307182
Molecular Weight (calculated) 47403.30 Da
IEP (calculated) 10.21
GRAVY (calculated) -0.88
Length 414 amino acids
Sequence (TAIR10)
(BLAST)
001: MALHLARPKQ RLHSNPSLIH LFSTSSSSSS SSPQDGNESN EQPSQSSSDY KISSYFSGIR SSLKQTQSQD GKRQFVRFDA KPQNSLSGNQ DIRRNLNEFR
101: SRATAPPPRD MQDLFKQNVL SKSGGTRRIE GVPLTNIKAN LRQMRPQQAT TESKWANLSG IQNIMKTNIN DNIRSNVIGG AAEGLPHSVV GKELEEEDVT
201: EEEMKSEFIK SYDPIELGEK LRLYRPEGKK EEGWFSLQEL NQRLVKLRAM EEEQFQKTSI VHPSFVNNLR SEFHKFTKAQ KSDPFQNTNI WGVLSGTPKY
301: MLEPPKDQLV ETYFHPDNMS SAEKMKIELA KVREEFKMSE SDCGSARVQV AQLTTKIKHL SSVLHKKDKH SRKGLIAMVQ RRKKLLKYMR RTDWDSYCLS
401: LSKLGLRDNP DYKF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)