suba logo
AT3G22300.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
mitochondrion 1.000
ASURE: mitochondrion
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ribosomal protein S10
Curator
Summary (TAIR10)
Nuclear-encoded gene for mitochondrial ribosomal small subunit protein S10
Computational
Description (TAIR10)
ribosomal protein S10 (RPS10); CONTAINS InterPro DOMAIN/s: Ribosomal protein S10 subgroup (InterPro:IPR005731), Ribosomal protein S10 (InterPro:IPR001848); BEST Arabidopsis thaliana protein match is: putative mitochondrial RNA helicase 1 (TAIR:AT3G22310.1); Has 2936 Blast hits to 2936 proteins in 744 species: Archae - 0; Bacteria - 1485; Metazoa - 4; Fungi - 0; Plants - 119; Viruses - 0; Other Eukaryotes - 1328 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J1D7eggNOG:ENOG4112CVEEMBL:AB022215EMBL:AF370548
EMBL:BT006286EMBL:CP002686EMBL:X80694EnsemblPlants:AT3G22300
EnsemblPlants:AT3G22300.1entrez:821799Gene3D:3.30.70.600GeneID:821799
Genevisible:P42797GO:GO:0003735GO:GO:0005739GO:GO:0005763
GO:GO:0006412Gramene:AT3G22300.1hmmpanther:PTHR11700hmmpanther:PTHR11700:SF7
HOGENOM:HOG000154213InParanoid:P42797InterPro:IPR001848InterPro:IPR027486
KEGG:ath:AT3G22300KO:K02946OMA:IKAQSHEPANTHER:PTHR11700
PaxDb:P42797Pfam:P42797Pfam:PF00338PIR:S66361
PRIDE:P42797PRINTS:PR00971PRO:PR:P42797ProteinModelPortal:P42797
Proteomes:UP000006548RefSeq:NP_188869.1SMART:SM01403SMR:P42797
STRING:3702.AT3G22300.1SUPFAM:SSF54999TAIR:AT3G22300tair10-symbols:RPS10
UniGene:At.22393UniProt:P42797
Coordinates (TAIR10) chr3:+:7885737..7886613
Molecular Weight (calculated) 27089.00 Da
IEP (calculated) 11.18
GRAVY (calculated) -0.41
Length 241 amino acids
Sequence (TAIR10)
(BLAST)
001: MIAGVLRRSS LPSRQTLSAA LASFNSCISH NLTPATTGAS VSSRFTLASS PNSFGIRARN IHIRSEPSMI VPAGIASQGY ATVTKDRKNE IKKAKIKISP
101: DNVRPLSRKE IALQKEAAEE STSKIKGTKI CIAIRSFVNP EKQAWCLPPH TRKVAMPDTR TLYTVLRSPH VDKKSREQFE MRFKKRFLVI KAQSHELSKK
201: LFWLKRYRIL GAQYELQFHC KTRLDMTQVL GNINGSTTNA Y
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)