AT1G18485.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Pentatricopeptide repeat (PPR) superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G57430.1); Has 47794 Blast hits to 13382 proteins in 245 species: Archae - 0; Bacteria - 5; Metazoa - 44; Fungi - 66; Plants - 47218; Viruses - 0; Other Eukaryotes - 461 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:6363172..6366084 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 108816.00 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.65 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.05 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 970 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MASVLLPLPQ VFVLFDYRRS RKESSFPRAV YNSNSISSNS TNANHFLRRI SNFCETGDLD KSFRTVQEFV GDDESSSDAF LLVREALGLL LQASGKRKDI 101: EMGRKIHQLV SGSTRLRNDD VLCTRIITMY AMCGSPDDSR FVFDALRSKN LFQWNAVISS YSRNELYDEV LETFIEMIST TDLLPDHFTY PCVIKACAGM 201: SDVGIGLAVH GLVVKTGLVE DVFVGNALVS FYGTHGFVTD ALQLFDIMPE RNLVSWNSMI RVFSDNGFSE ESFLLLGEMM EENGDGAFMP DVATLVTVLP 301: VCAREREIGL GKGVHGWAVK LRLDKELVLN NALMDMYSKC GCITNAQMIF KMNNNKNVVS WNTMVGGFSA EGDTHGTFDV LRQMLAGGED VKADEVTILN 401: AVPVCFHESF LPSLKELHCY SLKQEFVYNE LVANAFVASY AKCGSLSYAQ RVFHGIRSKT VNSWNALIGG HAQSNDPRLS LDAHLQMKIS GLLPDSFTVC 501: SLLSACSKLK SLRLGKEVHG FIIRNWLERD LFVYLSVLSL YIHCGELCTV QALFDAMEDK SLVSWNTVIT GYLQNGFPDR ALGVFRQMVL YGIQLCGISM 601: MPVFGACSLL PSLRLGREAH AYALKHLLED DAFIACSLID MYAKNGSITQ SSKVFNGLKE KSTASWNAMI MGYGIHGLAK EAIKLFEEMQ RTGHNPDDLT 701: FLGVLTACNH SGLIHEGLRY LDQMKSSFGL KPNLKHYACV IDMLGRAGQL DKALRVVAEE MSEEADVGIW KSLLSSCRIH QNLEMGEKVA AKLFELEPEK 801: PENYVLLSNL YAGLGKWEDV RKVRQRMNEM SLRKDAGCSW IELNRKVFSF VVGERFLDGF EEIKSLWSIL EMKISKMGYR PDTMSVQHDL SEEEKIEQLR 901: GHSEKLALTY GLIKTSEGTT IRVYKNLRIC VDCHNAAKLI SKVMEREIVV RDNKRFHHFK NGVCSCGDYW |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)