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AT2G41720.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
EMBRYO DEFECTIVE 2654 (EMB2654); INVOLVED IN: embryo development ending in seed dormancy; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G02860.1); Has 63033 Blast hits to 15489 proteins in 313 species: Archae - 3; Bacteria - 71; Metazoa - 950; Fungi - 1085; Plants - 58248; Viruses - 0; Other Eukaryotes - 2676 (source: NCBI BLink).
Protein Annotations
BioGrid:4108eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AC002339
EMBL:AY091135EMBL:AY117242EMBL:CP002685EnsemblPlants:AT2G41720
EnsemblPlants:AT2G41720.1entrez:818771ExpressionAtlas:Q8RWS8Gene3D:1.25.40.10
GeneID:818771Genevisible:Q8RWS8hmmpanther:PTHR24015hmmpanther:PTHR24015:SF262
HOGENOM:HOG000030732InParanoid:Q8RWS8IntAct:Q8RWS8InterPro:IPR002885
InterPro:IPR011990iPTMnet:Q8RWS8KEGG:ath:AT2G41720OMA:WRKYIEV
PaxDb:Q8RWS8Pfam:PF01535Pfam:PF13041Pfam:PF13812
Pfam:Q8RWS8Pfscan:PS51375PhylomeDB:Q8RWS8PIR:C84845
PRIDE:Q8RWS8PRO:PR:Q8RWS8PROSITE:PS51375ProteinModelPortal:Q8RWS8
Proteomes:UP000006548RefSeq:NP_850356.1SMR:Q8RWS8STRING:3702.AT2G41720.1
SUPFAM:SSF48452TAIR:AT2G41720tair10-symbols:EMB2654TIGRfam:TIGR00756
TIGRFAMs:TIGR00756UniGene:At.43624UniProt:Q8RWS8
Coordinates (TAIR10) chr2:-:17403744..17407127
Molecular Weight (calculated) 92419.00 Da
IEP (calculated) 9.03
GRAVY (calculated) -0.19
Length 822 amino acids
Sequence (TAIR10)
(BLAST)
001: MATVTNFKLV TPPESSRADK PGATKASDAF QEKKSVSVNY DRGEHEVSVN IGGLRKADIP RRYRIRVEND RFQKDWSVSE VVDRLMALNR WEEVDGVLNS
101: WVGRFARKNF PVLIRELSRR GCIELCVNVF KWMKIQKNYC ARNDIYNMMI RLHARHNWVD QARGLFFEMQ KWSCKPDAET YDALINAHGR AGQWRWAMNL
201: MDDMLRAAIA PSRSTYNNLI NACGSSGNWR EALEVCKKMT DNGVGPDLVT HNIVLSAYKS GRQYSKALSY FELMKGAKVR PDTTTFNIII YCLSKLGQSS
301: QALDLFNSMR EKRAECRPDV VTFTSIMHLY SVKGEIENCR AVFEAMVAEG LKPNIVSYNA LMGAYAVHGM SGTALSVLGD IKQNGIIPDV VSYTCLLNSY
401: GRSRQPGKAK EVFLMMRKER RKPNVVTYNA LIDAYGSNGF LAEAVEIFRQ MEQDGIKPNV VSVCTLLAAC SRSKKKVNVD TVLSAAQSRG INLNTAAYNS
501: AIGSYINAAE LEKAIALYQS MRKKKVKADS VTFTILISGS CRMSKYPEAI SYLKEMEDLS IPLTKEVYSS VLCAYSKQGQ VTEAESIFNQ MKMAGCEPDV
601: IAYTSMLHAY NASEKWGKAC ELFLEMEANG IEPDSIACSA LMRAFNKGGQ PSNVFVLMDL MREKEIPFTG AVFFEIFSAC NTLQEWKRAI DLIQMMDPYL
701: PSLSIGLTNQ MLHLFGKSGK VEAMMKLFYK IIASGVGINL KTYAILLEHL LAVGNWRKYI EVLEWMSGAG IQPSNQMYRD IISFGERSAG IEFEPLIRQK
801: LESLRNKGEG LIPTFRHEGT LL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)