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AT1G71720.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Nucleic acid-binding proteins superfamily
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Nucleic acid-binding proteins superfamily; FUNCTIONS IN: RNA binding; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Ribosomal protein S1, RNA-binding domain (InterPro:IPR003029); BEST Arabidopsis thaliana protein match is: ribosomal protein S1 (TAIR:AT5G30510.1); Has 12228 Blast hits to 10737 proteins in 2456 species: Archae - 10; Bacteria - 9648; Metazoa - 36; Fungi - 16; Plants - 190; Viruses - 0; Other Eukaryotes - 2328 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0539eggNOG:ENOG410IJGCEMBL:AC012654EMBL:CP002684
EnsemblPlants:AT1G71720EnsemblPlants:AT1G71720.1entrez:843502Gene3D:2.40.50.140
GeneID:843502GO:GO:0003676GO:GO:0005840Gramene:AT1G71720.1
hmmpanther:PTHR15838hmmpanther:PTHR15838:SF1HOGENOM:HOG000241559InterPro:IPR003029
InterPro:IPR012340InterPro:IPR022967KEGG:ath:AT1G71720KO:K02945
OMA:TMLTKEIPfam:PF00575Pfscan:PS50126PIR:E96739
PROSITE:PS50126Proteomes:UP000006548RefSeq:NP_177317.2SMART:SM00316
SMR:Q9M9H4STRING:3702.AT1G71720.1SUPFAM:SSF50249TAIR:AT1G71720
UniGene:At.25374UniGene:At.35171UniProt:Q9M9H4
Coordinates (TAIR10) chr1:+:26983744..26985893
Molecular Weight (calculated) 56329.40 Da
IEP (calculated) 4.77
GRAVY (calculated) -0.29
Length 500 amino acids
Sequence (TAIR10)
(BLAST)
001: MQTLLCQPCK SLPILTASSS SSLIRSSGDV RECIDFRASE KVSKFQFHVT LSPFAFRGFS ICREFAVRGA YGIRFCSRED VSGVGNGGIV AEEEIELLNK
101: PNPLPKSENE ESGKADDDAI LEPFLKFFKP EEEGEGIESE VSDETDRVSV EYYDPKPGDF VVGVVVSGNE NKLDVNIGAD MLGTMLTKEI LPLYDKELDY
201: LLCDLKYDAE EFLVNGKMGI VKDDDEGVEI AEFARQGRPV VEIGTVVFAE VLGRTLSGRP LLSSRRYFRR IAWHRVRQIK QLNEPIEVKI TEWNTGGLLT
301: RIEGLRAFIP KQELVKKVNT FTELKENVGR RFLVQITRLN EDKNDLILSE KVAWEKLYLR EGTLLEGTVV KILPYGAQVK LGDSSRSGLL HISNITRRRI
401: GSVSDVLQVD ESVKVLVVKS LFPDKISLSI ADLESEPGLF ISDREKVFTE AEEMAKKYRE KMPLVATSPI SDRPPITSSF PQGKDEEIYA NWEWFKFESQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)