AT3G49140.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Pentatricopeptide repeat (PPR) superfamily protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Pentatricopeptide repeat (PPR) superfamily protein; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G24060.2); Has 70134 Blast hits to 25407 proteins in 885 species: Archae - 91; Bacteria - 11736; Metazoa - 6625; Fungi - 3698; Plants - 39243; Viruses - 481; Other Eukaryotes - 8260 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:18212187..18215557 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 55873.80 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.05 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.77 | ||||||||||||||||||||||||||||||||||||
| Length | 499 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MIESVMAVRL STGFCSSTAL LQYRTAPSSE EGGNCFHYAS RRVFQPQRIH HIDGSGFLKY NSDYITRKHL RKNRTQATAE YVDSASDPEK QTGKSRYHPS 101: EEIRASLPQN DGDSRLSPAE TTRTIIEVNN KGTLMLTGSI GDGVHENILW PDIPYITDQN GNLYFQVKED EDVMQSVTSE NNYVQVIVGF DTMEMIKEME 201: LMGLSDSDFE TEDDESGDDD SEDTGEDEDE EEWVAILEDE DEDDDDDDDD DEDDDDSDSD ESLGDWANLE TMRSCHPMFF AKRMTEVASN DPVDWMDQPS 301: AGLAIQGLLS HILVEDYSDI QKKLADSNST TNGNKDAENL VDKLEDNSKA GGDESEIDSS QDEKARNVVA FYKLEMIRIQ LITAQGDQTE VEVEDVRKAQ 401: PDAIAHASAE IISRLEESGD KITEALKSLC WRHNSIQAEE VKLIGIDSLG FDLRLCAGAK IESLRFAFST RATSEENAEG QIRKLLFPKT NQSTQPKPK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)