AT4G37920.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 ASURE: plastid What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast, chloroplast envelope; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G36320.1); Has 123 Blast hits to 120 proteins in 40 species: Archae - 2; Bacteria - 11; Metazoa - 8; Fungi - 0; Plants - 85; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:17828538..17830317 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 48734.90 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.32 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.50 | ||||||||||||||||||||||||||||||||||||
| Length | 427 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MANLLETSIF FSSADKLLSF PPKNSQTHHL PFSAFINGGR KIRKSSTITF ATDTVTYNGT TSAEVKSSVE DPMEVEVAEG YTMAQFCDKI IDLFLNEKPK 101: VKQWKTYLVL RDEWNKYSVN FYKRCRIRAD TETDPILKQK LVSLESKVKK IDKEMEKHND LLKEIQENPT DINAIAAKRR RDFTGEFFRY VTLLSETLDG 201: LEDRDAVARL ATRCLSAVSA YDNTLESVET LDTAQAKFED ILNSPSVDSA CEKIRSLAKA KELDSSLILL INSAYAAAKE SQTVTNEAKD IMYHLYKATK 301: SSLRSITPKE IKLLKYLLNI TDPEERFSAL ATAFSPGDDH EAKDPKALYT TPKELHKWIK IMLDAYHLNK EETDIKEAKQ MSQPIVIQRL FILKDTIEDE 401: YLDKKTIVAD ETPKKEEEDT TIEDFLN |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)