AT5G04810.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:plastid 1.000 What is SUBAcon? |
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Description (TAIR10) | protein_coding : pentatricopeptide (PPR) repeat-containing protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Computational Description (TAIR10) |
pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: nucleotide binding, nucleic acid binding; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Pentatricopeptide repeat (InterPro:IPR002885), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR-like) superfamily protein (TAIR:AT1G05670.2); Has 66261 Blast hits to 20285 proteins in 585 species: Archae - 7; Bacteria - 408; Metazoa - 3695; Fungi - 2485; Plants - 56206; Viruses - 140; Other Eukaryotes - 3320 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Coordinates (TAIR10) | chr5:+:1390049..1393760 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 106746.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 7.14 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.43 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Length | 952 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MDNGGSVLSL SAPHFPYSAT ILRRHSPVAS ISFSLKQPPP QPPEPPESPP DLRRPEKSIG SSSSSSSPSP IPSPKTPLKI NPLKGLTNRS SVSPLVQSEV 101: SSKVSSFGSS LASKLRLSSK LSPPPPPPPP PPVEETTQFR DEFRSDTKPP EEETRNPQQE FRQEGKIFVG NLPTWIKKPE FEEFFRQFGP IENVILIKGH 201: HEVEKNAGFG FIIYAAEKSA MKAVEFDGVE FHGRILTVKL DDGKRLKTKA EQRVRWVEEG EEDTKMSNKS SWHQEREGSR KSLQRILDTN GDNWQAVISA 301: FEKISKPSRT EFGLMVKFYG RRGDMHRARE TFERMRARGI TPTSRIYTSL IHAYAVGRDM DEALSCVRKM KEEGIEMSLV TYSVIVGGFS KAGHAEAADY 401: WFDEAKRIHK TLNASIYGKI IYAHCQTCNM ERAEALVREM EEEGIDAPIA IYHTMMDGYT MVADEKKGLV VFKRLKECGF TPTVVTYGCL INLYTKVGKI 501: SKALEVSRVM KEEGVKHNLK TYSMMINGFV KLKDWANAFA VFEDMVKEGM KPDVILYNNI ISAFCGMGNM DRAIQTVKEM QKLRHRPTTR TFMPIIHGYA 601: KSGDMRRSLE VFDMMRRCGC VPTVHTFNGL INGLVEKRQM EKAVEILDEM TLAGVSANEH TYTKIMQGYA SVGDTGKAFE YFTRLQNEGL DVDIFTYEAL 701: LKACCKSGRM QSALAVTKEM SARNIPRNSF VYNILIDGWA RRGDVWEAAD LIQQMKKEGV KPDIHTYTSF ISACSKAGDM NRATQTIEEM EALGVKPNIK 801: TYTTLIKGWA RASLPEKALS CYEEMKAMGI KPDKAVYHCL LTSLLSRASI AEAYIYSGVM TICKEMVEAG LIVDMGTAVH WSKCLCKIEA SGGELTETLQ 901: KTFPPDWSSH HHHHGFLDQV SDVDSDEDDV DGEDGEDDED VNSVSDLLSP YK |
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
See Also |
|
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)