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AT4G31850.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31932409 (2020): plastid
  • PMID:29967049 (2018): plastid
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : proton gradient regulation 3
Curator
Summary (TAIR10)
encodes a protein containing 27 pentatrico-peptide repeat (PPR) motifs
Computational
Description (TAIR10)
proton gradient regulation 3 (PGR3); CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G06920.1); Has 108367 Blast hits to 15783 proteins in 329 species: Archae - 17; Bacteria - 129; Metazoa - 1401; Fungi - 2165; Plants - 100462; Viruses - 0; Other Eukaryotes - 4193 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AL049607EMBL:AL161579
EMBL:CP002687EnsemblPlants:AT4G31850EnsemblPlants:AT4G31850.1entrez:829314
Gene3D:1.25.40.10GeneID:829314Genevisible:Q9SZ52GO:GO:0009507
Gramene:AT4G31850.1hmmpanther:PTHR24015hmmpanther:PTHR24015:SF612HOGENOM:HOG000005824
InParanoid:Q9SZ52InterPro:IPR002885InterPro:IPR011990iPTMnet:Q9SZ52
KEGG:ath:AT4G31850OMA:AGNTENVPaxDb:Q9SZ52Pfam:PF01535
Pfam:PF12854Pfam:PF13041Pfam:PF13812Pfam:Q9SZ52
Pfscan:PS51375PhylomeDB:Q9SZ52PIR:T06307PRIDE:Q9SZ52
PRO:PR:Q9SZ52PROSITE:PS51375ProteinModelPortal:Q9SZ52Proteomes:UP000006548
RefSeq:NP_194913.1SMR:Q9SZ52STRING:3702.AT4G31850.1SUPFAM:SSF81901
TAIR:AT4G31850tair10-symbols:PGR3TIGRfam:TIGR00756TIGRFAMs:TIGR00756
UniGene:At.24222UniGene:At.66570UniProt:Q9SZ52
Coordinates (TAIR10) chr4:+:15403020..15406358
Molecular Weight (calculated) 124201.00 Da
IEP (calculated) 6.75
GRAVY (calculated) -0.04
Length 1112 amino acids
Sequence (TAIR10)
(BLAST)
0001: MVALLCSASL CGDISVGDAC LVSNIKAKCR DNLVTGGLKF HALKIGSRKK HWRRKSMRCS VVSMKSSDFS GSMIRKSSKP DLSSSEEVTR GLKSFPDTDS
0101: SFSYFKSVAG NLNLVHTTET CNYMLEALRV DGKLEEMAYV FDLMQKRIIK RDTNTYLTIF KSLSVKGGLK QAPYALRKMR EFGFVLNAYS YNGLIHLLLK
0201: SRFCTEAMEV YRRMILEGFR PSLQTYSSLM VGLGKRRDID SVMGLLKEME TLGLKPNVYT FTICIRVLGR AGKINEAYEI LKRMDDEGCG PDVVTYTVLI
0301: DALCTARKLD CAKEVFEKMK TGRHKPDRVT YITLLDRFSD NRDLDSVKQF WSEMEKDGHV PDVVTFTILV DALCKAGNFG EAFDTLDVMR DQGILPNLHT
0401: YNTLICGLLR VHRLDDALEL FGNMESLGVK PTAYTYIVFI DYYGKSGDSV SALETFEKMK TKGIAPNIVA CNASLYSLAK AGRDREAKQI FYGLKDIGLV
0501: PDSVTYNMMM KCYSKVGEID EAIKLLSEMM ENGCEPDVIV VNSLINTLYK ADRVDEAWKM FMRMKEMKLK PTVVTYNTLL AGLGKNGKIQ EAIELFEGMV
0601: QKGCPPNTIT FNTLFDCLCK NDEVTLALKM LFKMMDMGCV PDVFTYNTII FGLVKNGQVK EAMCFFHQMK KLVYPDFVTL CTLLPGVVKA SLIEDAYKII
0701: TNFLYNCADQ PANLFWEDLI GSILAEAGID NAVSFSERLV ANGICRDGDS ILVPIIRYSC KHNNVSGART LFEKFTKDLG VQPKLPTYNL LIGGLLEADM
0801: IEIAQDVFLQ VKSTGCIPDV ATYNFLLDAY GKSGKIDELF ELYKEMSTHE CEANTITHNI VISGLVKAGN VDDALDLYYD LMSDRDFSPT ACTYGPLIDG
0901: LSKSGRLYEA KQLFEGMLDY GCRPNCAIYN ILINGFGKAG EADAACALFK RMVKEGVRPD LKTYSVLVDC LCMVGRVDEG LHYFKELKES GLNPDVVCYN
1001: LIINGLGKSH RLEEALVLFN EMKTSRGITP DLYTYNSLIL NLGIAGMVEE AGKIYNEIQR AGLEPNVFTF NALIRGYSLS GKPEHAYAVY QTMVTGGFSP
1101: NTGTYEQLPN RA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)