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AT5G48910.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
FP Images

Arabidopsis cell culture (mitochondrial marker)

At5g48910-GFP (AA 1-100)mitochondrial marker-RFPoverlay

Images by Sandra Tanz

Arabidopsis cell culture (plastidal marker)

At5g48910-GFP (AA 1-100)plastidal marker-RFPoverlay

Images by Sandra Tanz
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Pentatricopeptide repeat (PPR) superfamily protein
Curator
Summary (TAIR10)
Encodes LPA66, a chloroplast protein of the pentatricopeptide repeat family. In lpa66 mutants, editing of psbF that converts serine to phenylalanine is specifically impaired. lpa66 mutants also display a high chlorophyll fluorescence phenotype.
Computational
Description (TAIR10)
LOW PSII ACCUMULATION 66 (LPA66); CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G66520.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AB017061EMBL:AY056318
EMBL:CP002688EnsemblPlants:AT5G48910EnsemblPlants:AT5G48910.1entrez:834949
Gene3D:1.25.40.10GeneID:834949Genevisible:Q9FI80GO:GO:0008270
GO:GO:0009451GO:GO:0009507Gramene:AT5G48910.1hmmpanther:PTHR24015
hmmpanther:PTHR24015:SF291HOGENOM:HOG000237569InParanoid:Q9FI80InterPro:IPR002885
InterPro:IPR011990InterPro:IPR032867KEGG:ath:AT5G48910OMA:EDCHSSI
PaxDb:Q9FI80Pfam:PF01535Pfam:PF13041Pfam:PF13812
Pfam:PF14432Pfam:Q9FI80Pfscan:PS51375PhylomeDB:Q9FI80
PRIDE:Q9FI80PRO:PR:Q9FI80PROSITE:PS51375ProteinModelPortal:Q9FI80
Proteomes:UP000006548RefSeq:NP_199702.1SMR:Q9FI80STRING:3702.AT5G48910.1
TAIR:AT5G48910tair10-symbols:LPA66TIGRfam:TIGR00756TIGRFAMs:TIGR00756
UniGene:At.26336UniProt:Q9FI80
Coordinates (TAIR10) chr5:-:19832969..19834909
Molecular Weight (calculated) 73262.90 Da
IEP (calculated) 7.12
GRAVY (calculated) -0.18
Length 646 amino acids
Sequence (TAIR10)
(BLAST)
001: MNPTQTLFSP GGNSPASSPA SHPSSLFPQI NNCRTIRDLS QIHAVFIKSG QMRDTLAAAE ILRFCATSDL HHRDLDYAHK IFNQMPQRNC FSWNTIIRGF
101: SESDEDKALI AITLFYEMMS DEFVEPNRFT FPSVLKACAK TGKIQEGKQI HGLALKYGFG GDEFVMSNLV RMYVMCGFMK DARVLFYKNI IEKDMVVMTD
201: RRKRDGEIVL WNVMIDGYMR LGDCKAARML FDKMRQRSVV SWNTMISGYS LNGFFKDAVE VFREMKKGDI RPNYVTLVSV LPAISRLGSL ELGEWLHLYA
301: EDSGIRIDDV LGSALIDMYS KCGIIEKAIH VFERLPRENV ITWSAMINGF AIHGQAGDAI DCFCKMRQAG VRPSDVAYIN LLTACSHGGL VEEGRRYFSQ
401: MVSVDGLEPR IEHYGCMVDL LGRSGLLDEA EEFILNMPIK PDDVIWKALL GACRMQGNVE MGKRVANILM DMVPHDSGAY VALSNMYASQ GNWSEVSEMR
501: LRMKEKDIRK DPGCSLIDID GVLHEFVVED DSHPKAKEIN SMLVEISDKL RLAGYRPITT QVLLNLEEED KENVLHYHSE KIATAFGLIS TSPGKPIRIV
601: KNLRICEDCH SSIKLISKVY KRKITVRDRK RFHHFQDGSC SCMDYW
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)