suba logo
AT1G29530.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G34310.3); Has 84 Blast hits to 78 proteins in 24 species: Archae - 2; Bacteria - 4; Metazoa - 9; Fungi - 8; Plants - 55; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JH8AeggNOG:ENOG4111B74EMBL:BT012535EMBL:BT014838
EMBL:CP002684EnsemblPlants:AT1G29530EnsemblPlants:AT1G29530.1entrez:839830
GeneID:839830Gramene:AT1G29530.1hmmpanther:PTHR37187hmmpanther:PTHR37187:SF1
HOGENOM:HOG000115141KEGG:ath:AT1G29530OMA:QGNQEFGPhylomeDB:Q6NL08
Proteomes:UP000006548RefSeq:NP_174246.2STRING:3702.AT1G29530.1TAIR:AT1G29530
UniGene:At.46766UniProt:Q6NL08
Coordinates (TAIR10) chr1:-:10325553..10326651
Molecular Weight (calculated) 24887.20 Da
IEP (calculated) 10.03
GRAVY (calculated) -0.71
Length 236 amino acids
Sequence (TAIR10)
(BLAST)
001: MPSGAKKRKA LKKKKQQEAI GTSINGNDEH GSQDGRGSDS SLSSPGSQGN QEFGTKDSSA LLSSAVVKGA SKEISRDAGV TQGLGPKTGN AIVEKSTNSS
101: SDNRTRPAKN VACGNSVTEI TPVVDSVKPV VSISKTVTSE KSGLVETSTH SNLVKKKSEK DEEYHPSPVL ENNNSKVVML PRSAPETSKK VESVRKSEVP
201: VSPEEKPLLL PGPPVVRRTS WLSCCGLFDA MTGSDR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)