AT1G66840.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Plant protein of unknown function (DUF827) | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a coiled-coil protein WEB2 (weak chloroplast movement under blue light 2, also named PMI2/plastid movement impaired 2). Involved in chloroplast avoidance movement under intermediate and high light intensities. WEB2, together with another coiled-coil protein WEB1 (AT2G26570), maintains the chloroplast photorelocation movement velocity. | ||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Plant protein of unknown function (DUF827); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF827, plant (InterPro:IPR008545); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF827) (TAIR:AT5G38150.1); Has 84275 Blast hits to 48824 proteins in 2535 species: Archae - 1385; Bacteria - 13811; Metazoa - 38158; Fungi - 6970; Plants - 4830; Viruses - 207; Other Eukaryotes - 18914 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:24933998..24936116 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 70243.90 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.86 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.80 | ||||||||||||||||||||||||||||||||||||||||
| Length | 607 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGERNLDGTV SVKATINKYG QKATRSVIKS SVAEDLHKSG RELGIYRESR RVAESAKAKA EVELCKAKKI VKELTLRIEE SNRRLKSRRI DIEAVMNESR 101: IDGNGGYVRI MRELEDMKQE LSKLKLDVVY VSREKVVAEK EVMELESRME ENLKLLESLK LEVDVANEEH VLVEVAKIEA LKECKEVEEQ REKERKEVSE 201: SLHKRKKRIR EMIREIERSK NFENELAETL LDIEMLETQL KLVKEMERKV QRNESMSRSK NRAFERGKDN LSVLKEVTEA TEAKKAELAS INAELFCLVN 301: TMDTLRKEFD HAKKETAWLD KMIQKDDVML ERLNTKLLIA KDQLEAVSKA EERISYLADN LTTSFEKLKS DREAAKKEEL KLREEARIIN NEIQKTETGF 401: DGKEKELLSK LDELEKAKHA ESLALEKLET MVEKTMETRE MESRRNSTIT ISRFEYEYLS GKACHAEETA EKKVEAAMAW VEALKASTKA IMIKTESLKR 501: VSGKTMLEEE RESFRMQRSL SIKRLVQDEI QKFKGNSEDN GLINSPKPVR KSVRLSGKFA PVQGGKSRRY SSGNRATPTF FVIKKKKKVP NMVKFFSRKR 601: RNSSLEQ |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)