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AT5G56850.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30962257 (2019): plastid
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J28ReggNOG:ENOG410ZE4TEMBL:CP002688EnsemblPlants:AT5G56850
EnsemblPlants:AT5G56850.1entrez:835787ExpressionAtlas:F4K940GeneID:835787
GO:GO:0009506Gramene:AT5G56850.1hmmpanther:PTHR36810hmmpanther:PTHR36810:SF1
InParanoid:F4K940iPTMnet:F4K940KEGG:ath:AT5G56850OMA:EDRNRIR
PaxDb:F4K940PhylomeDB:F4K940PRIDE:F4K940ProteinModelPortal:F4K940
Proteomes:UP000006548RefSeq:NP_200496.2STRING:3702.AT5G56850.1TAIR:AT5G56850
UniGene:At.29360UniProt:F4K940
Coordinates (TAIR10) chr5:-:22985432..22987977
Molecular Weight (calculated) 62043.80 Da
IEP (calculated) 9.64
GRAVY (calculated) -0.72
Length 551 amino acids
Sequence (TAIR10)
(BLAST)
001: MPGTIQVSVL GLIDVQTSSP GSSNTSIKVA MGKLEYQTSD SGDYIFPVTR LRENLIVTLL DVNGNQILQK EIETRMIIES GFLEEKLSFN GYGNVQLKMQ
101: FVLSEEDRNR IRFLRQSALR KKHEELVNGS SFTKSKSIAS DLSSLSSMQS RDIVAVASSK TNLGLSQETK LKTNADRDPV SSNLIMWKPE VKDSVEKTNI
201: QLSSSDVSSS KKVPEVKKLE SVSLVKQEDK GLNKPSKKLI EAESVLLVKQ EDKGLSKPRK KFTEAKTPES VSLVKQEETG LSKPERKPKR KSMRRSMSDS
301: NLNNVRKMIS NFEVKVTQDT KIRTAKIQTD SCKDAEEKTK AQPPAESTVN LEKSEERKII SFNNMEKSVC SDNTDRCDDL VIVSRDERTM DIEDKSLEHS
401: TRRSDLLSTQ RRSLVVEVRD DEKKQNKSVW LKDSQLENAR GSRLWIFPDE AKDLCCETDL GTRHLDLDLA EANLLQKRID ESTRENIGER GSRCINIAKI
501: NSNNKWTNIE RSKKQKSENS AESESSGRPV GQVMRALIVV GFAGLVFLTR Q
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)