AT2G28540.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : RNA binding (RRM/RBD/RNP motifs) family protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
RNA binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: nucleotide binding, zinc ion binding, nucleic acid binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Zinc finger, RING-type (InterPro:IPR001841), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), RNA recognition, domain 1 (InterPro:IPR003954); BEST Arabidopsis thaliana protein match is: RNA binding (RRM/RBD/RNP motifs) family protein (TAIR:AT3G45630.1); Has 925 Blast hits to 706 proteins in 218 species: Archae - 0; Bacteria - 26; Metazoa - 245; Fungi - 180; Plants - 141; Viruses - 0; Other Eukaryotes - 333 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:12218652..12223446 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 98244.50 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.29 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.70 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 882 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MNEKGEKTCP LCTEEMDLTD QHLKPCKCGY QICVWCWHHI IEMAEKDKTE GRCPACRTRY DKEKIVGMTV SCERLVAEFY IDRKKSQKAK PKPAEGRKDL 101: TGVRVIQRNL VYVMSLPFDL ADEDMFQRRE YFGQYGKVVK VAMSRTAAGA VQQFPNNTCS VYITYSKEEE AIRCIRSVHG FILDGRNLKA CFGTMKYCHA 201: WLRNMPCSNA ECLYLHEIGA QEDSFSKDET ISAHMRKMVQ DITGWRDHYV RRSGSMLPPP VDDYVDNESS TRIIPKVVLN NVHSAAKNSP PNDSNSHSVT 301: LPAGAMWGMH SSVPNTPSSR EPLRDKSATV SSAVAINPTQ ISSRSDELRK PALEAAGGNV LKPQSLLDGK TDFPELSSSN KTQISNSRNV VSASVDNSRA 401: ISEPSDCTDL PEHTSLSNGN KMINRRIQNG CSNVVSVDAD SVVDGYHGIT RSDKSHIDHA SIKPTLTEVS QDYLQRCVDE PREVQPLQKS GRTNANEVGV 501: SREEVNRGTS LMSPLGTGHY LEAEDDISLF YRQRLKDPEV LSCQSNGFLR PSNCMQPCSS QYKAEHDETR TVFGSSYSDS RGSNIAPISN GYTEMPLSEP 601: NQLNGSLNHS ILVPDKARDT QPIENCFVDS HESPSEIDDR IIANIMSLDL DEYLTSPHNY ANPFGESDEE ARSLKLASSS KVEDNQSRFS FARQEEPKDQ 701: AFDSYNASNQ MSRGNDFYQN SSERQSPNMG MFGTYNGLSS CYRRGLDYVT ESSTLPSSYK PTSVPRCPVS APPGFSVPTP SRPPPPGFSS NGRDHQMIDG 801: FSGNSRFSDS IAYGNHYQQS LPIENVRDVQ YMDPAILAVG QGFENASLDF RSNFQGNTNM YGSAAKLQQQ QQQAVYRSIS RQ |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)