AT4G34280.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.995 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : transducin family protein / WD-40 repeat family protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
transducin family protein / WD-40 repeat family protein; CONTAINS InterPro DOMAIN/s: U2A'/phosphoprotein 32 family A, C-terminal (InterPro:IPR003603), WD40 repeat 2 (InterPro:IPR019782), WD40 repeat (InterPro:IPR001680), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT1G61210.2); Has 5718 Blast hits to 4596 proteins in 341 species: Archae - 5; Bacteria - 811; Metazoa - 2365; Fungi - 1046; Plants - 644; Viruses - 0; Other Eukaryotes - 847 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:16407084..16410644 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 88175.90 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.59 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.30 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 783 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MATLTEIATL EEKYIELCKM HGILPNTAIL SAFFEAEVKK SRNQRCIMNL YVDRVKYDDY LPLLELCNEI NTSEVQGIDL FVRSACSLED HYALPLIRSV 101: NQKLRVVHLH DSFGKNFWQD VFFQGLSCKV LNVRSMHIHK LNIVGEFTQL HTLILDKNRI VGFGEDCFSC MPKLTYLSMC DTLVSDLWTS AAALLKLPSL 201: KELRFQIWIS CSDSSPLNSE SSPSSSTKDD INTFIESDPP VEADMWDVAE QMDPSLPVEE TLHSMDFSYK IPEQDDLDSH VSVSAGLNGE VLMREKVRRG 301: KMPYQPKDVS PVDTFTRQFG NVGLKYISSK ASPICSEKHY RMYMINSLPK LQVLDNLAIR KSDRDKAIET YSANFEDLPY KRKKESVVRV LENREKRSSK 401: GKSQNSYKRS LCAAKMGSPA SPLLHSLPFL SSRIQQEDDN SRLCPRQFEY HPLDPSLMVF GTLDGEVVVL NHESGKIFRY IPSNGSQSTI LGLCWLKIYP 501: SMVIAGSANG SLKLYDIQKA SSTVTTSSHS TSGSVTFDEF DQLTSVHANS TDQLFLASGY SKDVALYDIG RGTRLQVFAN MHQEHINVVK FSNHSPFLFA 601: TSSFDKDVKL WDLRQEPSRP CYTASSTKGN VMVCFSPDDR YLLASAVDNE VRQLLTVDGR LHLNFEIVPR VSSMNYTRSY YMNGNDYIIS GSCDENVIRV 701: CCAQTGRRLR DVTLEGNGSD FSMMYVQSLR GDPFRDFNMS VLAAYARSSS LSEIVKVNLL ASRDSTAEES HGLRSYPSSS MGG |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)