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AT1G04790.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RING/U-box superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G55530.1); Has 9425 Blast hits to 9403 proteins in 278 species: Archae - 0; Bacteria - 0; Metazoa - 2591; Fungi - 765; Plants - 4746; Viruses - 72; Other Eukaryotes - 1251 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG41121N2eggNOG:KOG0800EMBL:AY054498EMBL:BT008404
EMBL:CP002684EnsemblPlants:AT1G04790EnsemblPlants:AT1G04790.1entrez:839412
Gene3D:3.30.40.10GeneID:839412GO:GO:0008270Gramene:AT1G04790.1
hmmpanther:PTHR22763hmmpanther:PTHR22763:SF54HOGENOM:HOG000090534InterPro:IPR001841
InterPro:IPR013083KEGG:ath:AT1G04790OMA:NAIGHSIPfam:PF13639
Pfscan:PS50089PhylomeDB:Q93XZ6PROSITE:PS50089Proteomes:UP000006548
RefSeq:NP_563717.1SMART:SM00184SMR:Q93XZ6SUPFAM:SSF57850
TAIR:AT1G04790UniGene:At.42430UniGene:At.66861UniProt:Q93XZ6
Coordinates (TAIR10) chr1:+:1345469..1348143
Molecular Weight (calculated) 71497.30 Da
IEP (calculated) 8.71
GRAVY (calculated) -0.94
Length 634 amino acids
Sequence (TAIR10)
(BLAST)
001: MENSDIDMVI IPDTPDRSVH HREVKRRPHS PVAPLRYQRE EYRNHHLHGR ARPVPEIGDN RESSDTRTES GHRPRASVGN ALFRRTVVEK DKGKSISTDP
101: CAPRVEKNPV LNLNQRNGHV HVAASRYQPS EDIRELRTSN GCSPLRGDHN SFVLPGNSNK GKEKADSGSV PHRETIDLSS GKPQNRGTKR LVRHGCISPH
201: EIAARARQAA DTNSYDTLSV EQELASETAS SIGIREIVPE SDIHGRARGK RPEISSSRVA SRDGLEGWVS TRNRNLNMEH EMNHRDESNT RGICSSVTRL
301: DVRETGVVER ESRQQRRRKN GFTTSTASNE PEVTVNRSSG EPSSSRPPRI QNHLRHWHGT QVLEIEDSSP EVRVFRGPRR VENDVSDVNI RQIEADEILA
401: RELQEQLYRE ESLIRHEQID EIIARSMEQE ENSLRASSSR ASTRITRSSN TIAANPRGRS RLEARLQQHS SRRRFNPPQA RAPVRAPARG RGYRLGGASA
501: SLRTALNFSF PIDMGLDSRM DILEELENAI GHSITSSNLL HMDRDFTEDD YELLLALDEN NHRHGGASAN RINNLPESTV QTDNFQETCV ICLETPKIGD
601: TIRHLPCLHK FHKDCIDPWL GRSKSCPVCK SSVT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)