AT1G75660.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : 5'-3' exoribonuclease 3 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a protein with similarity to yeast 5'-3'exonucleases and can functionally complement the yeast mutations. In Arabidopsis XRN3 acts as a suppressor of posttranscriptional gene silencing. Mutants accumulate excised miRNA products suggesting that XRN3 is involved in degradation of these products. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
5'-3' exoribonuclease 3 (XRN3); CONTAINS InterPro DOMAIN/s: 5'-3' exoribonuclease 2 (InterPro:IPR017151), Zinc finger, CCHC-type (InterPro:IPR001878), Putative 5-3 exonuclease (InterPro:IPR004859); BEST Arabidopsis thaliana protein match is: exoribonuclease 2 (TAIR:AT5G42540.1); Has 4264 Blast hits to 3505 proteins in 442 species: Archae - 2; Bacteria - 295; Metazoa - 1361; Fungi - 725; Plants - 751; Viruses - 31; Other Eukaryotes - 1099 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:28408289..28414825 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 116832.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.00 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.75 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1020 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MGVPSFYRWL AEKYPLLVAD VIEEEPVEIE GIKIPVDTSK PNPNNLEYDN LYLDMNGIIH PCFHPEDRPS PTTFEEVFQC MFDYIDRLFV MVRPRKLLYM 0101: AIDGVAPRAK MNQQRSRRFR SAKDASDAAA EEERLREEFE REGRRLPPKV DSQVFDSNVI TPGTEFMGVL SIALQYYVHL RLNHDVGWKN IKVILSDANV 0201: PGEGEHKIMS YIRLQRNLPG FDPNTRHCLY GLDADLIMLG LATHEVHFSI LREVVYTPGQ QERCFLCGQM GHFASNCEGK PKKRAGESDE KGDGNDFVKK 0301: PYQFLHIWVL REYLELEMRI PNPPFEIDLE RIVDDFIFIC FFVGNDFLPH MPTLEIREGA INLLMAVYKK EFRSFDGYLT DGCKPNLKRV EQFIQAVGSF 0401: EDKIFQKRAM QHQRQAERVK RDKAGKATKR MDDEAPTVQP DLVPVARFSG SRLASAPTPS PFQSNDGRSA PHQKVRRLSP GSSVGAAIVD VENSLESDER 0501: ENKEELKTKL KELIREKSDA FNSDTTEEDK VKLGQPGWRE RYYEEKFSVV TPEEMERVRK DVVLKYTEGL CWVMHYYMEG VCSWQWFYPY HYAPFASDLK 0601: DLGEMDIKFE LGTPFKPFNQ LLGVFPAASS HALPERYRTL MTDPNSPIID FYPTDFEVDM NGKRFSWQGI AKLPFIDERR LLEAVSEVEF TLTDEEKRRN 0701: SRMCDMLFIA TSHRLAELVF SLDNHCRQLS ARERVDFKVK IKPKLSDGMN GYLTPCSGET HPPVFRSPME GMEDILTNQV ICCIYRLPDA HEHITRPPPG 0801: VIFPKKTVDI GDLKPPPALW HEDNGRRPMH NNHGMHNNHG MHNNQGRQNP PGSVSGRHLG NAAHRLVSNS LQMGTDRYQT PTDVPAPGYG YNPPQYVPPI 0901: PYQHGGYMAP PGAQGYAQPA PYQNRGGYQP RGPSGRFPSE PYQSQSREGQ HASRGGGYSG NHQNQHQQQQ WHGQGGSEQN NPRGYNGQHH HQQGGDHDRR 1001: GRGRGSHHHH DQGGNPRHRY |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)