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AT3G03380.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
golgi 0.948
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:20089771 (2010): plastid plastid thylakoid plastid thylakoid membrane
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:21166475 (2011): cytosol
FP Images

Arabidopsis cell culture (mitochondrial marker) v1

At3g03380-GFP
(full-length)
mitochondrial marker-RFPoverlay

Images by Sandra Tanz

Arabidopsis cell culture (plastidal marker) v1

At3g03380-GFP
(full-length)
plastidal marker-RFPoverlay

Images by Sandra Tanz

Arabidopsis cell culture (mitochondrial marker) v2

At3g03380-GFP
(full-length)
mitochondrial marker-RFPoverlay

Images by Sandra Tanz

Arabidopsis cell culture (plastidal marker) v2

At3g03380-GFP
(full-length)
plastidal marker-RFPoverlay

Images by Sandra Tanz
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : DegP protease 7
Curator
Summary (TAIR10)
Encodes a putative DegP protease.
Computational
Description (TAIR10)
DegP protease 7 (DegP7); CONTAINS InterPro DOMAIN/s: Serine/cysteine peptidase, trypsin-like (InterPro:IPR009003), Peptidase S1C, HrtA/DegP2/Q/S (InterPro:IPR001940), PDZ/DHR/GLGF (InterPro:IPR001478); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G03370.1); Has 8327 Blast hits to 7895 proteins in 2064 species: Archae - 65; Bacteria - 6254; Metazoa - 235; Fungi - 503; Plants - 137; Viruses - 0; Other Eukaryotes - 1133 (source: NCBI BLink).
Protein Annotations
BioGrid:6601EC:3.4.21.-eggNOG:COG0265eggNOG:KOG1421
EMBL:AC009895EMBL:AY078951EMBL:BT002727EMBL:CP002686
EnsemblPlants:AT3G03380EnsemblPlants:AT3G03380.1entrez:821268Gene3D:2.30.42.10
GeneID:821268Genevisible:Q8RY22GO:GO:0004252GO:GO:0005829
GO:GO:0008233GO:GO:0009507GO:GO:0010205Gramene:AT3G03380.1
hmmpanther:PTHR22939hmmpanther:PTHR22939:SF66HOGENOM:HOG000029666InParanoid:Q8RY22
InterPro:IPR001478InterPro:IPR001940InterPro:IPR009003InterPro:IPR025926
iPTMnet:Q8RY22KEGG:ath:AT3G03380merops:S01.434OMA:PTWELRG
PaxDb:Q8RY22Pfam:PF12812Pfam:PF13180Pfam:PF13365
Pfam:Q8RY22Pfscan:PS50106PhylomeDB:Q8RY22PRIDE:Q8RY22
PRINTS:PR00834PRO:PR:Q8RY22PROSITE:PS50106ProteinModelPortal:Q8RY22
Proteomes:UP000006548RefSeq:NP_566204.2SMART:SM00228SMR:Q8RY22
STRING:3702.AT3G03380.1SUPFAM:SSF50156SUPFAM:SSF50494TAIR:AT3G03380
tair10-symbols:DegP7UniGene:At.43063UniProt:Q8RY22
Coordinates (TAIR10) chr3:+:799720..808319
Molecular Weight (calculated) 119884.00 Da
IEP (calculated) 6.04
GRAVY (calculated) -0.16
Length 1097 amino acids
Sequence (TAIR10)
(BLAST)
0001: MGDPLERLGS QASMATESVM KEDLCLEIDP PLTESVATAE DWRRALGKVV PAVVVLRTTA CRAFDTESAG ASYATGFIVD KRRGIILTNR HVVKPGPVVA
0101: EAMFVNREEI PIYPVYRDPV HDFGFFCYDP SAVQFLTYQE IPLAPEAASV GLEIRVVGND SGEKVSILAG TLARLDRDAP HYKKDGYNDF NTFYMQAASG
0201: TKGGSSGSPV IDWQGRAVAL NAGSKSSSAS AFFLPLQRVV RALSFLQKSI DSRTDKPKAV HIPRGTLQMT FLHKGFDEIR RLGLRSETEQ VVRHASPTGE
0301: TGMLVVDSVV PSGPADKHLE PGDVLVRVNG TVLTQFLNLE NLLDDGVGQI LELEIERGGQ PLSVSVSVQD LHSITPDHFL EVSGAVIHPL SYQQARNFRF
0401: PCGLAYVADP GYMLFRAGVP RHAIIKKVAN EDISSLGDLV SVLSKLSRGA RVPLEYMSHT DRHRKKSVLV TIDHHEWYAP PQLYTRNDSS GLWDAKPAIE
0501: PASVSPSIGN NGFPISQDIS LCHHDTEPMH EVNVRGVTDI AAIMETSSGD GSQNDFGSEA KKQRVDEDSS DGIAANGSLY GSEFKSDDAM ETDTTVLRDF
0601: EGATALSANA SLAERAIEPA LVMFEVHVPP SCSLDGVHSQ HFFGTGIIIY HSSNMGLAVV DKNTVAISAS DVMLSFAAFP VEIPGEVVFL HPVHNYALIA
0701: YNPSAMDPAS ASVIRAAELL PEPALQRGDS VYLVGLSRNL QATSRKSIVT NPCAALNIGS ADSPRYRATN MEVIELDTDF GSSFSGALTD EQGRIRAIWG
0801: SFSTQVKYSS TSSEDHQFVR GIPVYAISQV LEKIITGGNG PALLINGVKR PMPLVRILEV ELYPTLLSKA RSFGLSDEWI QVLVKKDPVR RQVLRVKGCL
0901: AGSKAENLLE QGDMVLAVNK MPVTCFNDIE AACQTLDKGS YSDENLNLTI LRQGQELELV VGTDKRDGNG TTRVINWCGC VVQDPHPAVR ALGFLPEEGH
1001: GVYVTRWCHG SPAHRYGLYA LQWIVEVNGK KTPDLNAFAD ATKELEHGQF VRIRTVHLNG KPRVLTLKQD LHYWPTWELR FDPETALWRR NILKALQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)