AT2G48160.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Tudor/PWWP/MBT domain-containing protein | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Tudor/PWWP/MBT domain-containing protein; CONTAINS InterPro DOMAIN/s: RNA polymerase II, large subunit, CTD (InterPro:IPR006569), PWWP (InterPro:IPR000313); BEST Arabidopsis thaliana protein match is: Tudor/PWWP/MBT domain-containing protein (TAIR:AT3G63070.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:19689784..19696584 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 149675.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.19 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.78 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1366 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MAPSRRKGGG RAAAVAAACR KRKVGDLVLA KVKGFPAWPA VVSEPEKWDA SPDSKKVFVH FFGTQQIAFC NPGDVEAFTE ERKQSLLTRR HAKGSDFVRA 0101: VKEIIESYEK LKQQERASDP KSAEEGTLGS AENTTLMPQV IEIPTATSLT QMNSDPSHGR DESTLLNEDA SAAEQMLALR DNSGPRNKAC DSAVVKEPRK 0201: IATYSSRKRN GGVRSQNCAP QNETCPVQRS KSPSRLQTEK LQSSMLQNSD GGQTIDDVED GALRREKRIR RSSGHSESDD VATSSLNSHG SDEENASEIA 0301: TVESDNNRNE GNGVDSGSKV EQIDIGGKFL EGDYDLNKGL NFQINIMVKR KKRKPTRKRG TSDVVDPQAK VEGEAVPEAG ARNNVQTSQN SHEKFTERPC 0401: EENGDEHLPL VKRARVRMSR AFYGNHEANS SLQAEERSPK DTVVSATAQT SPSDIISSHD TFAVEESKFF EVSAKLSGDM VNVAPSPVEK SHDGMSPSEA 0501: CVQTVREREY AMGWNELSKT PDDKSAGPQY NQVSSLPAGE AQTASVPEAV CPEVLKLLTS ESDLPAVQYC QVAKIEPSMD PNTVDSSANN ASEICSLSIP 0601: SQLSGQDRSN DQDACVSLEN SREYLNEEGS KIDACVAQVV QSEAIEHSPS SCLVVNKQET ENMPKTVNML LKEGHGSLGE ECAIVEPAQC TPNLPISATE 0701: SDVIVGENVP LNEIGCTKCE DAVEDSRQLK MIGETNDQKQ QVQTNNSVLV SENLSREKMS FSPAITADTP ARGTPHSSSV YYHISTSESA NDMQNNSSGS 0801: PNIPTGEKKN DCDAIVKEEE KIETGVCQGQ KVVSCDVQST RESYEDALCS LVRTKESIGR ATCLAMDLMK FGVSAKAMEI LAHTLESESN LKRRVDLFFL 0901: VDSIAQCSKG LKGDTGCVYL SAIQVILPRL LAAAVPAGAT TQENRKQCLK VLKLWLERRI LPESIVRHHI RELDSHSIVP ACLYSRRSAR TERSLDDPVR 1001: DMEDMLVDEY GSNSTLQLPG FCMPALLKDE EGGSDSEGGC DSEGGSDSDG GDFESVTPEH ESRILEENVS SSTAERHTLI LEDVDGELEM EDVAPPWGTE 1101: NCTHTDQADN TKVSNCQLGQ QHRPVFGTSH QHMSLSSPPL PSSSPPPPPA PPSQQGECAM PDSYLNGFEN GGYRNVHGDQ QAGPLRMNPP LSGSTMHYQG 1201: PESSYISGVQ LTNSIPQADG SNFQHRPYPS HPHPHPPPPP PPPQHQFSFR EPGHVLKSHR DAPSYSHRSH YVPNCDERNF HDNHERMRHA PFENRDNWRY 1301: PPSSSYGSRY QDEHKAPYPS SSYNGVRWDN PPRQYNNRPS FHPKPHSEGP APVGMRDPGM WHQRSD |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)