AT2G17510.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.945 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : ribonuclease II family protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
EMBRYO DEFECTIVE 2763 (EMB2763); FUNCTIONS IN: ribonuclease activity, RNA binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleotide binding protein, PINc (InterPro:IPR006596), Ribonuclease II/R (InterPro:IPR001900); BEST Arabidopsis thaliana protein match is: Ribonuclease II/R family protein (TAIR:AT1G77680.1); Has 8124 Blast hits to 8011 proteins in 2302 species: Archae - 41; Bacteria - 5304; Metazoa - 409; Fungi - 408; Plants - 147; Viruses - 2; Other Eukaryotes - 1813 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:7609395..7615881 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 105002.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.42 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.36 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 933 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MLQSKVFNKK TRGGRIQKQV REVYLRDDIY CGAFSCKSCD SSAARLSSSK IIVVDTNVVL HQIDLLENKA IDTVVVLSVV LDEVKNRNRS VYNRIRLLCS 101: NPARQFYVFS NHVHKDTYVQ AMEKESANDH NDRAIRVATL WYQKHLGDTS QVLLVTNDRE NKRKATEEGI SAETIEAYVK SLGQPELLDL LAQPTNEDIT 201: MEDADDSRPS KRKLIYQEHK PMSEITAGLH RGIYHQGKLR VNRFNPYEAY VGSESIGEEI IIYGRSNMNR AFDGDIVAVE LLPRDQWQDE KALSIAEEDD 301: EEDDTVHLAP DNVDDAPRTS NLSHETSGDK NAAPVRPSGR VVGVIRRNWH SYCGSLEPMS LPAGSGGTAH ALFVSKDRRI PKIRINTRQL QNLLDMRIVV 401: AVDSWDRQSR YPSGHYVRPI GKIGDKETET EVVLIENDVD YSPFSSQVLA CLPPLPWSVS SEDVSNPVRQ DLRHLLVFSV DPPGCKDIDD ALHCTSLPNG 501: NFELGVHIAD VTNFVHPGTP LDDEASKRGT SVYLVERRID MLPKPLTEDI CSLRADVERL AFSVIWEMSP DAEIISTRFT KSIIKSSAAL SYIEAQARMD 601: DSRLTDSLTT DLRNMNTLAK IMRQRRIDRG ALTLASAEVK FDIDPENHDP LNIGMYQILE ANQMVEEFML AANVSVAGQI LKLFPSCSLL RRHPTPTREM 701: LEPLLRTAAA IGLTLDVSSS KALADSLDRA VGEDPYFNKL IRILATRCMT QAVYFCSGDL SPPEYHHYGL AAPLYTHFTS PIRRYADVFV HRLLAASLGI 801: YKLPTVFQDR PQLTSVADNL NYRHRNAQMA GRASVELYVL IYFRTRPTDE EARVVKIRSN GFIVFVPKYG IEGPVYLTGK GEKGAGDWYV DEEKQKIVKM 901: DGSLSYSVLQ TVKIHMEVVE PQPNRPKLQL TLL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)