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AT3G16830.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.997
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31520498 (2020): mitochondrion
  • PMID:30961429 (2019): nucleus
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:22550958 (2012): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : TOPLESS-related 2
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
TOPLESS-related 2 (TPR2); FUNCTIONS IN: protein binding; INVOLVED IN: primary shoot apical meristem specification; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), CTLH, C-terminal LisH motif (InterPro:IPR006595), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), LisH dimerisation motif (InterPro:IPR006594), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: TOPLESS-related 3 (TAIR:AT5G27030.1); Has 13436 Blast hits to 8919 proteins in 512 species: Archae - 16; Bacteria - 3246; Metazoa - 4126; Fungi - 2976; Plants - 1389; Viruses - 0; Other Eukaryotes - 1683 (source: NCBI BLink).
Protein Annotations
BioGrid:6270DIP:DIP-58586NeggNOG:ENOG410IQ0IeggNOG:ENOG410YEX8
EMBL:AB028608EMBL:AY074277EMBL:CP002686EnsemblPlants:AT3G16830
EnsemblPlants:AT3G16830.1entrez:820936Gene3D:2.130.10.10GeneID:820936
Genevisible:Q9LRZ0GO:GO:0005634GO:GO:0006351GO:GO:0006355
GO:GO:0010072Gramene:AT3G16830.1hmmpanther:PTHR22847hmmpanther:PTHR22847:SF424
HOGENOM:HOG000237725InParanoid:Q9LRZ0IntAct:Q9LRZ0InterPro:IPR001680
InterPro:IPR006594InterPro:IPR006595InterPro:IPR011047InterPro:IPR015943
InterPro:IPR017986InterPro:IPR019775InterPro:IPR027728iPTMnet:Q9LRZ0
KEGG:ath:AT3G16830MINT:MINT-8375683ncoils:CoilOMA:GLVMTND
PANTHER:PTHR22847:SF424PaxDb:Q9LRZ0Pfam:PF00400Pfam:Q9LRZ0
Pfscan:PS50082Pfscan:PS50294Pfscan:PS50896Pfscan:PS50897
PhylomeDB:Q9LRZ0PRIDE:Q9LRZ0PRO:PR:Q9LRZ0PROSITE:PS00678
PROSITE:PS50082PROSITE:PS50294PROSITE:PS50896PROSITE:PS50897
ProteinModelPortal:Q9LRZ0Proteomes:UP000006548RefSeq:NP_188306.2scanprosite:PS00678
SMART:SM00320SMART:SM00667SMART:SM00668SMR:Q9LRZ0
STRING:3702.AT3G16830.1SUPFAM:SSF50978SUPFAM:SSF50998TAIR:AT3G16830
tair10-symbols:TPR2UniGene:At.24033UniProt:Q9LRZ0
Coordinates (TAIR10) chr3:+:5731709..5737531
Molecular Weight (calculated) 124766.00 Da
IEP (calculated) 7.28
GRAVY (calculated) -0.31
Length 1131 amino acids
Sequence (TAIR10)
(BLAST)
0001: MSSLSRELVF LILQFLDEEK FKESVHKLEQ ESGFFFNIKY FEEKALAGEW DEVEKYLSGF TKVDDNRYSM KIFFEIRKQK YLEALDRNDR AKAVEILAKD
0101: LKVFATFNEE LYKEITQLLT LENFRENEQL SKYGDTKSAR SIMYTELKKL IEANPLFREK LAFPSFKASR LRTLINQSLN WQHQLCKNPR PNPDIKTLFL
0201: DHSCSPSNGA RALTPVNLPV AAVARPSNFV PLGVHGGPFQ SNPAPAPNAN ALAGWMANPN PSSSVPSGVV AASPFPMQPS QVNELKHPRA PSNSLGLMDY
0301: QSADHEQLMK RLRSAQTSNE VTYPAHSHPP ASLDDLPRNV VSTIRQGSVV ISMDFHPSHH TLLAVGCSSG EVTLWEVGSR EKVVTEPFKI WNMAACSVIF
0401: QGSIVKEPSI SVTRVAWSPD GNLLGVSFTK HLIHVYAYQG SDLRQHLEID AHVGCVNDLA FAHPNKQMCV VTCGDDKLIK VWDLSGKKLF TFEGHEAPVY
0501: SICPHQKENI QFIFSTALDG KIKAWLYDNV GSRVDYDAPG QWCTTMLYSA DGSRLFSCGT SKEGDSFLVE WNESEGALKR TYLGFRKKSA GVVQFDTTRN
0601: RFLAVGEDNQ IKFWNMDNTN LLTVVEAEGG LPNLPRLRFN KDGNLLAVTT ADNGFKILAN TDGLRTLRAF EARSFEASKA SIDMKVSTSA MASSISPAIG
0701: KIEHMDAGSP ARPTPIPNGI EAMSRTMEKP RNLDSVDKSK PLELTEIVDP TQCRQVTMPD SKDSVSKVAR LLYTNSGVGV LALGSNGVQR LWKWIRNEQN
0801: PTGKATASVT PQHWQPNSGL LMANDVPENP EGSVPCIALS KNDSYVMSAC GGKVSLFNMM TFKVMTTFMP PPPASTFLAF HPQDNNIIAI GMEDSSIHIY
0901: NVRVDEVKTK LKGHQKHITG LAFSTALNIL VSSGADAQLF FWTADSWEKK KSSAIQLPPG KAPVGDTRVQ FHNDQIQLLV SHETQLAIYD ASKMECIHKW
1001: VPQEALSSPI TSASYSCNSQ LVYASFADGN IAVFDAESLR LRCRIAPSAY MPQPTPNSAP IFPQVITAHP QEPNQLAVGL SDGSVKVIEP SELSRRWGVG
1101: VAAGSDKAGT ENGRPSSSSA ANNSSSDQIQ R
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)