AT3G16830.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:nucleus 0.997 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Description (TAIR10) | protein_coding : TOPLESS-related 2 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Computational Description (TAIR10) |
TOPLESS-related 2 (TPR2); FUNCTIONS IN: protein binding; INVOLVED IN: primary shoot apical meristem specification; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), CTLH, C-terminal LisH motif (InterPro:IPR006595), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), LisH dimerisation motif (InterPro:IPR006594), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: TOPLESS-related 3 (TAIR:AT5G27030.1); Has 13436 Blast hits to 8919 proteins in 512 species: Archae - 16; Bacteria - 3246; Metazoa - 4126; Fungi - 2976; Plants - 1389; Viruses - 0; Other Eukaryotes - 1683 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Coordinates (TAIR10) | chr3:+:5731709..5737531 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 124766.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 7.28 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.31 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Length | 1131 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
0001: MSSLSRELVF LILQFLDEEK FKESVHKLEQ ESGFFFNIKY FEEKALAGEW DEVEKYLSGF TKVDDNRYSM KIFFEIRKQK YLEALDRNDR AKAVEILAKD 0101: LKVFATFNEE LYKEITQLLT LENFRENEQL SKYGDTKSAR SIMYTELKKL IEANPLFREK LAFPSFKASR LRTLINQSLN WQHQLCKNPR PNPDIKTLFL 0201: DHSCSPSNGA RALTPVNLPV AAVARPSNFV PLGVHGGPFQ SNPAPAPNAN ALAGWMANPN PSSSVPSGVV AASPFPMQPS QVNELKHPRA PSNSLGLMDY 0301: QSADHEQLMK RLRSAQTSNE VTYPAHSHPP ASLDDLPRNV VSTIRQGSVV ISMDFHPSHH TLLAVGCSSG EVTLWEVGSR EKVVTEPFKI WNMAACSVIF 0401: QGSIVKEPSI SVTRVAWSPD GNLLGVSFTK HLIHVYAYQG SDLRQHLEID AHVGCVNDLA FAHPNKQMCV VTCGDDKLIK VWDLSGKKLF TFEGHEAPVY 0501: SICPHQKENI QFIFSTALDG KIKAWLYDNV GSRVDYDAPG QWCTTMLYSA DGSRLFSCGT SKEGDSFLVE WNESEGALKR TYLGFRKKSA GVVQFDTTRN 0601: RFLAVGEDNQ IKFWNMDNTN LLTVVEAEGG LPNLPRLRFN KDGNLLAVTT ADNGFKILAN TDGLRTLRAF EARSFEASKA SIDMKVSTSA MASSISPAIG 0701: KIEHMDAGSP ARPTPIPNGI EAMSRTMEKP RNLDSVDKSK PLELTEIVDP TQCRQVTMPD SKDSVSKVAR LLYTNSGVGV LALGSNGVQR LWKWIRNEQN 0801: PTGKATASVT PQHWQPNSGL LMANDVPENP EGSVPCIALS KNDSYVMSAC GGKVSLFNMM TFKVMTTFMP PPPASTFLAF HPQDNNIIAI GMEDSSIHIY 0901: NVRVDEVKTK LKGHQKHITG LAFSTALNIL VSSGADAQLF FWTADSWEKK KSSAIQLPPG KAPVGDTRVQ FHNDQIQLLV SHETQLAIYD ASKMECIHKW 1001: VPQEALSSPI TSASYSCNSQ LVYASFADGN IAVFDAESLR LRCRIAPSAY MPQPTPNSAP IFPQVITAHP QEPNQLAVGL SDGSVKVIEP SELSRRWGVG 1101: VAAGSDKAGT ENGRPSSSSA ANNSSSDQIQ R |
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
See Also |
|
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)