AT4G14720.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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| FP Images |
7-day old Arabidopsis seedling (no marker)
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : TIFY domain/Divergent CCT motif family protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
PPD2 (and its paralog, PPD1) encode plant-specific putative DNA-binding proteins. Deletion of the PPD locus increases leaf lamina size and results in dome-shaped rather than flat leaves. Siliques are also altered in shape because of extra lamina growth. | ||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
TIFY domain/Divergent CCT motif family protein; CONTAINS InterPro DOMAIN/s: Tify (InterPro:IPR010399), Acireductone dioxygenase, ARD (InterPro:IPR004313), CCT domain-like (InterPro:IPR018467); BEST Arabidopsis thaliana protein match is: TIFY domain/Divergent CCT motif family protein (TAIR:AT4G14713.1); Has 315 Blast hits to 312 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 313; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:8432452..8434934 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 34851.30 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.11 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.74 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 315 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDVGVTTAKS ILEKPLKLLT EEDISQLTRE DCRKFLKEKG MRRPSWNKSQ AIQQVLSLKA LYEPGDDSGA GILRKILVSQ PPNPPRVTTT LIEPRNELEA 101: CGRIPLQEDD GACHRRDSPR SAEFSGSSGQ FVADKDSHKT VSVSPRSPAE TNAVVGQMTI FYSGKVNVYD GVPPEKARSI MHFAANPIDL PENGIFASSR 201: MISKPMSKEK MVELPQYGLE KAPASRDSDV EGQANRKVSL QRYLEKRKDR RFSKTKKAPG VASSSLEMFL NRQPRMNAAY SQNLSGTGHC ESPENQTKSP 301: NISVDLNSDL NSEDN |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)