AT5G07970.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : dentin sialophosphoprotein-related | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
dentin sialophosphoprotein-related; BEST Arabidopsis thaliana protein match is: dentin sialophosphoprotein-related (TAIR:AT5G07980.1); Has 632 Blast hits to 476 proteins in 106 species: Archae - 0; Bacteria - 104; Metazoa - 115; Fungi - 33; Plants - 123; Viruses - 0; Other Eukaryotes - 257 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:2544126..2547916 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 121125.00 Da | ||||||||||||||||||||||||
| IEP (calculated) | 6.25 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.71 | ||||||||||||||||||||||||
| Length | 1097 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MPGNEYGERI HNFFGQEGLS QDSHQPQAGD GSWSGFRNGL VSNQRQIDPS LIANLKTYST QQSVDPERGQ SSNSQHGLNF AQQPMRSDYS RSVLREHQQS 0101: TTGYMHGNLM LQASPNEGSF VGVDVESSRD RLSGSGFTLD RHKTPMRFDM GESPVNYDFF GGQQQLNNQL PGMIQPFPRQ QMTFNDMQLL KQHAMAKQMH 0201: EYQIQQQLQK QQLEARQLNS LHSNAVNGSL SSDNQSHPSI SGVPLQDASN NWLQPDLMTG NTNWMHRGIS PIVQSSSSGL VITPEHGHAN LMAQQFETSL 0301: YGMPVGGTDA PQNAFSSFQM KMLAAQHGSA NMSSSLTNQP TSFLNQSDSH MLPRSTYQEN LYSHISVPGS NDRPNFESFQ QDNSGQQNIS GQEEFGQMDG 0401: SGLSEKSFMK VPENINTLQK STTLDPTEEK ILFGSDDNLW EAFGNSTDMS LTGNLMSSSS DLFDACPSLQ SGSWSALMQS AVAETASDDA GVHEWGSKQQ 0501: SVWANNINAP HPDSRIGNRA QVSGGHTDST RSTVQHLQDK GNIVSDHGLL EKPMTPQSQM AGNMFQSLSS GIDVQNNSCS IGKNEDIDDR LGNWRGASNP 0601: NSAALMERKN HFTQNLQMQR ASYGAGDDSR ASRDIQQNIQ HHLDNNSVEK AIHQLNSGDS SQILESYASN NVSKVMTESN EMGNSGKENS SDSFRSKFSP 0701: ESLTQVNARD LSVLPGGKET QSPSRSDGLI RDGLNHKDSA NCMLQFGPTI SQSFFNKNHA VSAGSDHQQI SPQIAPSRFS QYEAFKNGLV QPVNDTGRFT 0801: LLKIGERYSN LGNSDDGLHS VQSSKQLNTA DPGYIVHMQQ ISGSTPGVET LSSASLPCGA TDQLLKVYKP KKRKNVTSEL LSWSKEVMQR PQRLKTLGEA 0901: EVDWARATNR FAEKVEFATL LEDGPPIRSK RRLIYTTQLM QQLFRPLPGR VKSLVTSYEF VAYSAARAAL GDACSSTSTD RIEGFLLQNN LNPLSERTET 1001: EKMSDQYISK AAEDFISRTK KLETDFAGLE KGTTITDLRV EVQDLERFAV INRFASFHQS SSSMDRSVSS LRLNPQRYVT VAPVPRHIPD RVQCLSF |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)