AT5G07980.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : dentin sialophosphoprotein-related | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
dentin sialophosphoprotein-related; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G07940.2); Has 1336 Blast hits to 783 proteins in 174 species: Archae - 4; Bacteria - 291; Metazoa - 248; Fungi - 128; Plants - 141; Viruses - 0; Other Eukaryotes - 524 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:2549432..2554669 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 164370.00 Da | ||||||||||||||||||||||||
| IEP (calculated) | 6.73 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.78 | ||||||||||||||||||||||||
| Length | 1501 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MPGNEFGERT HNFFGQEGLS QDQHQSQVVD GSWSSFSNGL VGNQRQIDPS LTADLKSYRT QQPVDPERGQ SSNSQHGLNF TQQPMRSEYS RSVLQEPQQP 0101: TNGYMHGNLG LQTMPNEANV LGMDVESSRD KLSERGFTPD LHKIPTRFEM GESPVNYDFF GGQQQSNTQL PGMLQPLPRQ QVSFNDMQLL KQQVMVKQMH 0201: EYQMQQQLQK QRLEARQLNS LNRNAVNGSC VSDNQSHMIN GIPLQNASSN WLQPDLMTGN TNWMHRGISP AVQGSSSGLM ITPDHGQANL MAQQFEPSLY 0301: GMPVSGTNAP HNAFSSSQMN RLAAQHGSAN RTSSVTNQPT SFLNQGDVQD SHMLPRSTYP EKLLFSQTSV PSSNSMPNFE SLQEDDSRER NISVQAKFGQ 0401: MEGSGPSEQS FIKAPENINA LQKSTALDPT EEKILFGSDD NLWEAFGNST DMSLTGNLMS SSSDLFDGCP SLQSGSWSAL MQSAVAETSS DDAGVHEWAN 0501: NSTGPHANFH RGNMAQDLGA KTSNTLSGRV HSDSTRTAVQ HLQDRGNSVA DNGLLENSMA QRNLMAENIF HSSSSGVDGQ NNSCSIRKNE GVEDRLGIWK 0601: AASNPNLVAL KEQNPSMQRT SYGFGIAGAG NDSRHLDNNS LEKAIPHLNS RDGSQILESY SSNNAGSNEM VNTRDLSTLP GGKETQSGHV GVRPSIPRKF 0701: QYHPMGNIDV TDEPCRGKVS RFGQSQSLGQ PAMNTLTDKG HVSQNDLNRT NKAFKGMGPE NSPSTSASAD RSVDRCNQVN SASSRLELLH KVDPSPENSS 0801: ETNVTGIHEA NAFADYGGQF RHNQASASQG FNLQLAPPSQ LAPSPDNMQF FRNSLQPLNS FHTGPEKGGT SQSRFAPWGS NQSFHQSTHQ GPFPGILGGS 0901: NMTSGFPYSR GYHQNQQMAV GTRQSAAINS VNSSSELSTP AVKERDESSD FDQRGHSAEG FRMLSASQPL VASSSPQQNS SSGMMSDPPA GISAPQLRFW 1001: NQPLPQSDIL RPHPSPGNNM AVSFSRQEKT NQLSSQNGDV SLSGRDIVNM HELQSKDMGA KQTSNVASMF SKMVQSNNQS FGRSLPSNNF PKDSLRHDEQ 1101: MAGSGEGDAP KMTVKRVENS AIDPQKVAPK GEQQSPSKSD SLVRDGLNHR ESVNHMPYFG QNVTQSFSTK NHSASVGADH QQISPQMAPS WYSQYGTFKN 1201: GLVQPVNDTG RFTPLKIGEQ SSNVGSSVDG THSVQLSQHF KMQQMSGSTL GAEIPSSESL PHGATEQLLK VNKPKKRKTA TSELIPWNKE VMQGHQRLKT 1301: LGEAEVDWAR ATNRFAEKVE FETLLEDSPP IKSKRRLVYT TQLMQQLCSP PPARVISLVA SSNYEFVAYT AARGALGDAC SSSSTDRSEG FWPPNISNPL 1401: SERTKTEKIS DQYISKAAED FISRTRKLET DFARLENGTT IPDLRVEVQD LEKFAVINRF AKFHPPSMDR TLNSVRINPQ RYVTVAPMPQ NIPDRVQCLS 1501: L |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)