AT3G51120.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : DNA binding;zinc ion binding;nucleic acid binding;nucleic acid binding | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
DNA binding;zinc ion binding;nucleic acid binding;nucleic acid binding; FUNCTIONS IN: DNA binding, zinc ion binding, nucleic acid binding; INVOLVED IN: histone modification, transcription initiation; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), Plus-3 domain, subgroup (InterPro:IPR018144), Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, PHD-type (InterPro:IPR001965), GYF (InterPro:IPR003169), SWIB/MDM2 domain (InterPro:IPR003121), Plus-3 (InterPro:IPR004343), SWIB domain (InterPro:IPR019835), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: nucleic acid binding;zinc ion binding;DNA binding (TAIR:AT2G16485.1); Has 2327 Blast hits to 1758 proteins in 258 species: Archae - 0; Bacteria - 308; Metazoa - 909; Fungi - 193; Plants - 493; Viruses - 18; Other Eukaryotes - 406 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr3:-:18986026..18991886 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 142099.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 6.80 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.61 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Length | 1292 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
0001: MENQQKQLQQ GVPELASLAG REESSVRGID LMRVDQCEEI GVNQVPALSV PASTVAGAVA VPMSNEQEVK VIDEAAPIKR KRGRPPRAQA NTPLHIRPPP 0101: PPPKKEDKEE DVCFICFDGG DLVLCDRRNC PKAYHPACIK RDEAFFRTTA KWNCGWHICG TCQKASSYMC YTCTFSVCKR CIKDADYVIV RGNMGLCGTC 0201: IKPIMLIENI AQGDNEAVKV DFDDKLSWEY LFKVYWLCLK EELSLTVDEL TRANNPWKEV PNTAPKVESQ NDHTNNRALD VAVNGTKRRR TSDSPTLPNK 0301: LDGKNPSNIL KKAPGDTSWA TKELLEFVSF MKNGDTSVLS QFDVQGLLLD YIKKKNLRDP LQKSQVLCDQ MLVKLFGKQR VGHFEMLKLL ESHVLIQEKP 0401: KGAKTTNGET THAVPSQIEE DSVHDPMVRD RRRKMRRKTD GRVQNENLDA YAAIDVHNIN LIYLRRKFLE SLLDDINKVD EKVVGTILRI KVSGSDQKLD 0501: IHRLVQVVGT SKAIASYQLG AKTTDVMLEI LNLDKREVIS IDQLSDQNIT EDECKRLRQS IKCGLNKRLT VVDILKTAAT LQAMRINEAL EAEILKLNHL 0601: RDRAKKLELL KSPEERQRLL QEVPEVHTDP SMDPSHALSE DAGLGTRKQD NHVKAQSKGP QNKGVNLNNV GNNVQKKYDA PILRSRNNVH ADKDDCSKVH 0701: NNSSNIQETG KDDEESEIWH YRDPTGKTQG PFSMVQLRRW KSSGHFPPYL RIWRAHENQD ESVLLTDALA GRFDKATTLP SSSSLPQELK PSPHDSGRTG 0801: ADVNCLQKNQ MPVNTSATSS SSSTVTAHSN DPKEKQVVAL VACSGKVEDG NSVRPQPQVS CPASISVVPG HVVTPDVRET PGTDQYNTVR ADGNHNTTKT 0901: LEDETNGGSV SINGSVHAPN LNQESHFLDF PSPTPKSSPE DLEAQAAETI QSLSSCVLVK GPSGVTWSTT TTSTTDAATT TSSVVVTGGQ LPQVIQQNTV 1001: VLAAPSVKPI ELAADHATAT QTSDNTQVAQ ASGWPAIVAD PDECDESVSD LLAEVEAMEQ NGLPSSPTST FHCDDDDDLK GPEKDFFNPV ARMSLTPETC 1101: RLDVSQTSIL DNVSAGKSSM LTEAKDNTPF SHCGTAGPEL LLFAPPPPPP TAISHDLTLT TTALRLGSET TVEAGTVERL PKSVLGVSSE PSPRSLSSHD 1201: SSSARGSTER SPRVSQPKRS SGHSRDRQWL NNGHNSSFNN SHNNRQWPYS NSHGYDHGSG SYAAHPPKGL KICKFYESGY CKRGASCSFW HP |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)