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AT1G58220.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24134884 (2013): cytoskeleton microtubules
  • PMID:20843791 (2010): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Homeodomain-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Homeodomain-like superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: response to jasmonic acid stimulus, response to abscisic acid stimulus, response to salicylic acid stimulus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT1G09710.1); Has 27282 Blast hits to 17301 proteins in 1269 species: Archae - 28; Bacteria - 5926; Metazoa - 10247; Fungi - 4749; Plants - 1505; Viruses - 560; Other Eukaryotes - 4267 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IEHJeggNOG:ENOG410XQS3EMBL:AK117128EMBL:AY519547
EMBL:BT005971EMBL:CP002684EnsemblPlants:AT1G58220EnsemblPlants:AT1G58220.1
entrez:842189Gene3D:1.10.10.60GeneID:842189GO:GO:0003677
GO:GO:0009737GO:GO:0009751GO:GO:0009753Gramene:AT1G58220.1
hmmpanther:PTHR21717hmmpanther:PTHR21717:SF20HOGENOM:HOG000143462InterPro:IPR001005
InterPro:IPR009057InterPro:IPR017930KEGG:ath:AT1G58220OMA:ASYVPSE
Pfam:PF00249Pfscan:PS51294PhylomeDB:Q8GZ96PROSITE:PS51294
Proteomes:UP000006548RefSeq:NP_176118.2SMART:SM00717SMR:Q8GZ96
STRING:3702.AT1G58220.1SUPFAM:SSF46689TAIR:AT1G58220UniGene:At.27969
UniProt:Q8GZ96
Coordinates (TAIR10) chr1:-:21558388..21562669
Molecular Weight (calculated) 86286.10 Da
IEP (calculated) 10.60
GRAVY (calculated) -0.23
Length 834 amino acids
Sequence (TAIR10)
(BLAST)
001: MVDNSNNKKR KEFISEADIA TLLQRYDTVT ILKLLQEMAY YAEAKMNWNE LVKKTSTGIT SAREYQLLWR HLAYRDSLVP VGNNARVLDD DSDMECELEA
101: SPGVSVDVVT EAVAHVKVMA ASYVPSESDI PEDSTVEAPL TINIPYSLHR GPQEPSDSYW SSRGMNITFP VFLPKAAEGH NGNGLASSLA PRKRRKKWSA
201: EEDEELIAAV KRHGEGSWAL ISKEEFEGER TASQLSQRWG AIRRRTDTSN TSTQTGLQRT EAQMAANRAL SLAVGNRLPS KKLAVGMTPM LSSGTIKGAQ
301: ANGASSGSTL QGQQQPQPQI QALSRATTSV PVAKSRVPVK KTTGNSTSRA DLMVTANSVA AAACMSGLAT AVTVPKIEPG KNAVSALVPK TEPVKTASTV
401: SMPRPSGISS ALNTEPVKTA VAASLPRSSG IISAPKVEPV KTAASAASLP RPSGMISAPK VEPVKTTASV ASLPRPSGII SAPKAEPVKT AASAASSPRP
501: SGMISAPKVE SVKTTASMPR PSGIISAPKA ELVKSAASAA SLPCTSGIIS SPKAELVKSA ASAASFPRPS SMLSAPKADP VKIVPAAATN TKSVGPLNLR
601: HAVNGSPNHT IPSSPFTKPL HMAPLSKGST IQSNSVPPSF ASSRLVPTQR APAATVVTPQ KPSVVAAATV VTPQKPSVGA AATVVTPQKP SVGAAANVVT
701: PQKPSVGSAA TVVTPQKPSV GAAVTVTSKP VGVQKEQTQG NRASPLVTAT LPPNKTIPAN SVIGTAKAVA AKVETPPSLM PKKNEVVGSC TDKSSLDKPP
801: EKESTTTVSP LAVAATKSKP KDEATVTGTG LKEL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)