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AT5G11350.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : DNAse I-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
DNAse I-like superfamily protein; CONTAINS InterPro DOMAIN/s: Endonuclease/exonuclease/phosphatase (InterPro:IPR005135); BEST Arabidopsis thaliana protein match is: DNAse I-like superfamily protein (TAIR:AT1G73875.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G11350-MONOMEREC:3.1.13.4eggNOG:COG5239eggNOG:KOG2338
EMBL:AL360314EMBL:AY069916EMBL:AY143977EMBL:CP002688
EnsemblPlants:AT5G11350EnsemblPlants:AT5G11350.1entrez:831006Gene3D:3.60.10.10
GeneID:831006Genevisible:Q8VYU4GO:GO:0003723GO:GO:0004535
GO:GO:0005634GO:GO:0005737GO:GO:0006351GO:GO:0006355
GO:GO:0046872Gramene:AT5G11350.1hmmpanther:PTHR12121hmmpanther:PTHR12121:SF48
HOGENOM:HOG000111455InParanoid:Q8VYU4InterPro:IPR005135KEGG:ath:AT5G11350
OMA:NPVDGCAPaxDb:Q8VYU4Pfam:PF03372Pfam:Q8VYU4
PhylomeDB:Q8VYU4PRIDE:Q8VYU4PRO:PR:Q8VYU4ProteinModelPortal:Q8VYU4
Proteomes:UP000006548RefSeq:NP_196696.2SMR:Q8VYU4STRING:3702.AT5G11350.1
SUPFAM:SSF56219TAIR:AT5G11350UniGene:At.27820UniProt:Q8VYU4
Coordinates (TAIR10) chr5:+:3621583..3625412
Molecular Weight (calculated) 84929.60 Da
IEP (calculated) 5.64
GRAVY (calculated) -0.73
Length 754 amino acids
Sequence (TAIR10)
(BLAST)
001: MRRSRFVAQV FSDVTFADAS TISAPIFTMS TRAPYRGARG RGRGRGGRSF SDRPYNDDAG RDQFVTGDSH FQSVHDANFR FRHGEPYRQH QPPLDQRQQP
101: PFNQNYEFRP PPPSRGQWQQ FRQPNQFPSN QNYAACPPPP FYQNQMSRPP PQQSFRQRPR SKPSDYREWE YAKTPPSPGS EKFVVLSYNI LADYLANDHW
201: RSLYFHIPRN MLSWGWRKSK LVFELSLWSA DIMCLQEVDK FQDLEEEMKH RGYSAIWKMR TGNAVDGCAI FWRSNRFKLV HEESIQFNQL GLRDNVAQIC
301: VLETLLTSHT KENETPPPES SAGSHRVVIC NIHVLFNPKR GDFKLGQVRT LLDKAHAVSK LWDDAPIVLC GDFNCTPKSP LYNFISDRKL DLSGLARDKV
401: SGQVSAEFRP PRPENYTTRY QSANKSPQGQ VQPPNLITNA HMENNSNIDV GTAPSEKTSE LPCGDTILAG HEATSSSDQV LPCENMASDC QFGIENRKPD
501: DSGNLSTAED LSSLTISDTE PQHASSARED LNTDRSVSSG LSETEQTPEE ICSSDQDISS SLSTKVDTFV AEMKLDGLKL DEPVVFAQDE ESLGEDGETF
601: LAKLHDNNEN LSQKGELVSE VPLKWSSEAL NSDKITYSPS SWTPMEIATA TGDPERTTVE HALELKSTYS EVEGQANTRD ENGEPVVTSY HRCFMGTVDY
701: IWRSEGLQTV RVLAPIPKQA MQWTPGFPTP KWGSDHIALV SELAFCSSKT LPKS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)