AT1G07910.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : RNAligase | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a tRNA ligase that resembles the yeast Trl1 RNA ligase in structure and function but very different in sequence. Like Trl1, AtRNL consists of two domains — an N-terminal ligase component and a C-terminal 5'-kinase/2',3'-cyclic phosphodiesterase (CPD) component— that can function in tRNA splicing in vivo when expressed as separate polypeptides. Requires a 2'-PO4 end for tRNA splicing in vivo. | ||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
RNAligase (RNL); CONTAINS InterPro DOMAIN/s: tRNA ligase, phosphodiesterase, fungi (InterPro:IPR015965); Has 209 Blast hits to 196 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 3; Plants - 200; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:2446712..2454386 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 123212.00 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.14 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.40 | ||||||||||||||||||||||||||||||||||||
| Length | 1104 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MDAPFESGDS SATVVAEAVN NQFGGLSLKE SNTNAPVLPS QTTSNHRVQN LVWKPKSYGT VSGSSSATEV GKTSAVSQIG SSGDTKVGLN LSKIFGGNLL 0101: EKFSVDKSTY CHAQIRATFY PKFENEKTDQ EIRTRMIEMV SKGLATLEVS LKHSGSLFMY AGHKGGAYAK NSFGNIYTAV GVFVLSRMFR EAWGTKAPKK 0201: EAEFNDFLEK NRMCISMELV TAVLGDHGQR PLDDYVVVTA VTELGNGKPQ FYSTSEIISF CRKWRLPTNH VWLFSTRKSV TSFFAAFDAL CEEGIATSVC 0301: RALDEVADIS VPASKDHVKV QGEILEGLVA RIVSSQSSRD MENVLRDHPP PPCDGANLDL GLSLREICAA HRSNEKQQMR ALLRSVGPSF CPSDVEWFGD 0401: ESHPKSADKS VITKFLQSQP ADYSTSKLQE MVRLMKEKRL PAAFKCYHNF HRAEDISPDN LFYKLVVHVH SDSGFRRYHK EMRHMPSLWP LYRGFFVDIN 0501: LFKSNKGRDL MALKSIDNAS ENDGRGEKDG LADDDANLMI KMKFLTYKLR TFLIRNGLSI LFKDGAAAYK TYYLRQMKIW GTSDGKQKEL CKMLDEWAAY 0601: IRRKCGNDQL SSSTYLSEAE PFLEQYAKRS PKNHILIGSA GNLVRTEDFL AIVDGDLDEE GDLVKKQGVT PATPEPAVKE AVQKDEGLIV FFPGIPGSAK 0701: SALCKELLNA PGGFGDDRPV HTLMGDLVKG KYWPKVADER RKKPQSIMLA DKNAPNEDVW RQIEDMCRRT RASAVPIVAD SEGTDTNPYS LDALAVFMFR 0801: VLQRVNHPGK LDKESSNAGY VLLMFYHLYE GKNRNEFESE LIERFGSLIK MPLLKSDRTP LPDPVKSVLE EGIDLFNLHS RRHGRLESTK GTYAAEWTKW 0901: EKQLRDTLVA NSEYLSSIQV PFESMVHQVR EELKTIAKGD YKPPSSEKRK HGSIVFAAIN LPATQVHSLL EKLAAANPTM RSFLEGKKKS IQEKLERSHV 1001: TLAHKRSHGV ATVASYSQHL NREVPVELTE LIYNDKMAAL TAHVGSVDGE TVVSKNEWPH VTLWTAEGVT AKEANTLPQL YLEGKASRLV IDPPVSISGP 1101: LEFF |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)