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AT1G26170.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.500
nucleus 0.500
ASURE: cytosol,nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ARM repeat superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ARM repeat superfamily protein; FUNCTIONS IN: protein transporter activity, binding; INVOLVED IN: intracellular protein transport, protein import into nucleus, docking; LOCATED IN: nucleus, nuclear pore, cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Importin-beta, N-terminal (InterPro:IPR001494), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT3G59020.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5657eggNOG:KOG2274EMBL:CP002684EnsemblPlants:AT1G26170
EnsemblPlants:AT1G26170.1entrez:839158Gene3D:1.25.10.10GeneID:839158
GO:GO:0005622GO:GO:0006886Gramene:AT1G26170.1hmmpanther:PTHR10997
hmmpanther:PTHR10997:SF9InParanoid:F4IE40InterPro:IPR001494InterPro:IPR011989
InterPro:IPR016024iPTMnet:F4IE40KEGG:ath:AT1G26170OMA:FVLTNWL
PaxDb:F4IE40Pfam:PF03810Pfscan:PS50166PRIDE:F4IE40
PROSITE:PS50166ProteinModelPortal:F4IE40Proteomes:UP000006548RefSeq:NP_173942.2
SMART:SM00913STRING:3702.AT1G26170.1SUPFAM:SSF48371TAIR:AT1G26170
UniGene:At.49918UniProt:F4IE40
Coordinates (TAIR10) chr1:-:9047539..9054438
Molecular Weight (calculated) 113475.00 Da
IEP (calculated) 4.52
GRAVY (calculated) 0.03
Length 1022 amino acids
Sequence (TAIR10)
(BLAST)
0001: MVVDQDQQWL LGCLSASLDP NQNVRSFAET SLNQASLQPG FGSALCRVAA NKDLSLGLRQ LAAVLLKQFI KKHWRENEEA FEYPLVSSEE KALIRGQLLG
0101: SLDDSHRKIC TAISMDISSI ATYDWPEEWP ELVPFLLKLI SDPSNTNGVH GALRCLALLS GELDDKEVPT LVPVLFPCLH AVVSSPQSYD KYIRGKALTI
0201: VYSCIYVLGA MSGVYKTETT TLVTPVLKVW MNQFSLILEH PVQREDPDDW SLRMEVLKCL NQFVQNFPSL IESELMAIMR PLWHTFESSL QVYLRSSIDG
0301: AEDSYDGRYD SDGEEKSLDT FVIQLFEFLS TIVSSRRLSK TIAGNVRELV YQTVAFLQIT EQQVHTWSMD VNQFVADEDE GSYSCRISGI LLLEEVINTF
0401: GSEGINAVVD AAGKRFQESQ RENSASSLSW WRLREAVLFT LASLSDQLVE AEDLRIDPAN LAKFIEQLIM EDTGIGYHEC PFLYARIFTA VAKFSSVINA
0501: GILEHFLNAA VRAITMDVPP PVKVGACRAL LQLLPDMNSS VILPQIMNLF SSLTDLLRQA TDETLVLVLE TLQQAIKAGH EASASIESII SPVILNVWVA
0601: HISDPFMSID VIDVLEAIKN SPGCLHPLTS RILPFIGPIL NKPHQQPEGL ASGSLDLLTM LLKGAPSDIV KTAYDFCFAA VIRIVLHSED HGELQNATEC
0701: LAAFISSGRQ ELLTWSGDPG FTMRSLLDAT SRLLNPDLEG SGSLFAGKYI LQLILHLPSE MAPHVQDLVA ALVRRLQSAE ILALKGSLLL IFARLVHMSY
0801: PNVDQFINLL VSIPADGHEN SFTYVMTEWT KQQGEIQSAY QIKVTTSALA LLLSTRHSEF AKVNVPGSPI QSNGGITTRS KARSAPEQWT IIPLPMKILA
0901: LLADTLIEIQ EQVLSNEDED SEWEEVHEGD AKAEKDLLRS AGTSQFSKPT YDQLEAMARF ENQDDEVDDH LLGTDPLNEI NLASYVADFL LKFSSEDRPL
1001: FDNLCQGLTN AQRNVIHMAL NR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)