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AT1G27900.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:20061580 (2010): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RNA helicase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RNA helicase family protein; FUNCTIONS IN: in 7 functions; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helicase-associated domain (InterPro:IPR007502), ATPase, AAA+ type, core (InterPro:IPR003593), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), Domain of unknown function DUF1605 (InterPro:IPR011709), DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site (InterPro:IPR002464), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: ATP-dependent RNA helicase, putative (TAIR:AT3G26560.1); Has 10760 Blast hits to 9882 proteins in 1732 species: Archae - 26; Bacteria - 3503; Metazoa - 2392; Fungi - 1270; Plants - 841; Viruses - 1056; Other Eukaryotes - 1672 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-1568-MONOMEREC:3.6.4.13eggNOG:COG1643EMBL:AC069471
EMBL:AC079280EMBL:AY054692EMBL:AY128718EMBL:CP002684
EnsemblPlants:AT1G27900EnsemblPlants:AT1G27900.1entrez:839683Gene3D:3.40.50.300
GeneID:839683GO:GO:0003676GO:GO:0005524GO:GO:0005681
GO:GO:0006397GO:GO:0008026GO:GO:0008380Gramene:AT1G27900.1
hmmpanther:PTHR18934hmmpanther:PTHR18934:SF131HOGENOM:HOG000175261InterPro:IPR001650
InterPro:IPR002464InterPro:IPR003593InterPro:IPR007502InterPro:IPR011709
InterPro:IPR014001InterPro:IPR027417KEGG:ath:AT1G27900KO:K12818
OMA:KLYPVEIPfam:PF00271Pfam:PF04408Pfam:PF07717
Pfam:PF13401Pfscan:PS51192Pfscan:PS51194PhylomeDB:Q93Y16
PIR:C86404PROSITE:PS00690PROSITE:PS51192PROSITE:PS51194
ProteinModelPortal:Q93Y16Proteomes:UP000006548RefSeq:NP_564296.1scanprosite:PS00690
SMART:SM00382SMART:SM00487SMART:SM00490SMART:SM00847
SMR:Q93Y16STRING:3702.AT1G27900.1SUPFAM:SSF52540TAIR:AT1G27900
UniGene:At.25438UniProt:Q93Y16
Coordinates (TAIR10) chr1:-:9715615..9720346
Molecular Weight (calculated) 78374.40 Da
IEP (calculated) 8.13
GRAVY (calculated) -0.28
Length 700 amino acids
Sequence (TAIR10)
(BLAST)
001: MANLPILQFE EKIVETVEKN SVVVIIGETG SGKSTQLSQI LHRHGYTKSG VIAITQPRRV AAVSVARRVA QELDVPLGED VGYAIRFEDR TTSKTRIKYL
101: TDGVLLRESL SNPMLDDYSV IILDEAHERS LNTDILLGLV KRLVRIRASN FKVLITSATL DGEKVSEFFS GCPVLNVPGK LYPVEILYSK ERPVSYIESS
201: LKVAIDIHVR EPEGDILIFM TGQDDIEKLV SRLEEKVRSL AEGSCMDAII YPLHGSLPPE MQVRVFSPPP PNCRRFIVST NIAETSLTVD GVVYVIDSGY
301: VKQRQYNPSS GMFSLDVIQI SKVQANQRAG RAGRTRPGKC YRLYPLAVYR DDFLDATIPE IQRTSLAGSV LYLKSLDLPD IDILKFDFLD APSSESLEDA
401: LKQLYFIDAI DENGAITRIG RTMSDLPLEP SLSRTLIEAN ETGCLSQALT VVAMLSAETT LLPARSKPSE KKRKHDEDSN LPNGSGYGDH IQLLQIFESW
501: DRTNYDPVWC KENGMQVRGM VFVKDVRRQL CQIMQKISKD RLEVGADGRK SSSRDDYRKL RKALCVGNAN QIAERMLRHN GYRTLSFQSQ LVQVHPSSVL
601: SADNDGMMPN YVVYHELIST TRPFMRNVCA VDMAWVAPIK RKIEKLNVRK LSGGPAPSFK VPEEKTELSK NNAETPAVSE NVESRIEAAR ERFLARKGQK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)