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AT1G03190.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : RAD3-like DNA-binding helicase protein
Curator
Summary (TAIR10)
UV damage and heat induce a common stress response in plants that leads to tissue death and reduced chloroplast function. The UVH6 product is suggested to be a negative regulator of this response.
Computational
Description (TAIR10)
ULTRAVIOLET HYPERSENSITIVE 6 (UVH6); FUNCTIONS IN: in 6 functions; INVOLVED IN: DNA repair, response to UV, response to heat; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Helicase, superfamily 1/2, ATP-binding domain, DinG/Rad3-type (InterPro:IPR014013), Xeroderma pigmentosum group D protein (InterPro:IPR001945), Helicase-like, DEXD box c2 type (InterPro:IPR006554), Helicase, ATP-dependent, c2 type (InterPro:IPR006555), DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site (InterPro:IPR002464), DEAD2 (InterPro:IPR010614), DNA helicase (DNA repair), Rad3 type (InterPro:IPR013020), Protein of unknown function DUF1227 (InterPro:IPR010643); BEST Arabidopsis thaliana protein match is: RAD3-like DNA-binding helicase protein (TAIR:AT1G20720.1); Has 3290 Blast hits to 2576 proteins in 779 species: Archae - 308; Bacteria - 1186; Metazoa - 653; Fungi - 359; Plants - 198; Viruses - 2; Other Eukaryotes - 584 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G03190-MONOMERBioCyc:ARA:GQT-122-MONOMERBioGrid:24792EC:3.6.4.12
eggNOG:COG1199eggNOG:KOG1131EMBL:AC005278EMBL:AF188623
EMBL:AY062471EMBL:AY090788EMBL:AY090915EMBL:BT010344
EMBL:CP002684EnsemblPlants:AT1G03190EnsemblPlants:AT1G03190.1EnsemblPlants:AT1G03190.2
entrez:839557Gene3D:3.40.50.300GeneID:839557Genevisible:Q8W4M7
GO:GO:0003677GO:GO:0004003GO:GO:0005524GO:GO:0005634
GO:GO:0006281GO:GO:0006289GO:GO:0006351GO:GO:0006355
GO:GO:0009408GO:GO:0009411GO:GO:0046872GO:GO:0051539
Gramene:AT1G03190.1Gramene:AT1G03190.2hmmpanther:PTHR11472hmmpanther:PTHR11472:SF1
HOGENOM:HOG000205390InParanoid:Q8W4M7IntAct:Q8W4M7InterPro:IPR001945
InterPro:IPR002464InterPro:IPR006554InterPro:IPR006555InterPro:IPR010614
InterPro:IPR010643InterPro:IPR013020InterPro:IPR014013InterPro:IPR027417
iPTMnet:Q8W4M7KEGG:ath:AT1G03190KO:K10844ncoils:Coil
OMA:DEVWKYKPaxDb:Q8W4M7Pfam:PF06733Pfam:PF06777
Pfam:PF13307Pfam:Q8W4M7Pfscan:PS51193PhylomeDB:Q8W4M7
PIR:C86163PRIDE:Q8W4M7PRINTS:PR00852PRO:PR:Q8W4M7
PROSITE:PS00690PROSITE:PS51193ProteinModelPortal:Q8W4M7Proteomes:UP000006548
Reactome:R-ATH-113418Reactome:R-ATH-5696395Reactome:R-ATH-5696400Reactome:R-ATH-674695
Reactome:R-ATH-6781823Reactome:R-ATH-6782135Reactome:R-ATH-6782210Reactome:R-ATH-72086
Reactome:R-ATH-73776Reactome:R-ATH-73779Reactome:R-ATH-75953Reactome:R-ATH-76042
Reactome:R-ATH-77075RefSeq:NP_171818.1RefSeq:NP_849584.1scanprosite:PS00690
SMART:SM00488SMART:SM00491STRING:3702.AT1G03190.1SUPFAM:SSF52540
TAIR:AT1G03190tair10-symbols:ATXPDtair10-symbols:UVH6TIGRfam:TIGR00604
TIGRFAMs:TIGR00604UniGene:At.10863UniProt:Q8W4M7
Coordinates (TAIR10) chr1:+:775822..779863
Molecular Weight (calculated) 86240.40 Da
IEP (calculated) 7.49
GRAVY (calculated) -0.15
Length 758 amino acids
Sequence (TAIR10)
(BLAST)
001: MIFKIEDVTV YFPYDNIYPE QYEYMVELKR ALDAKGHCLL EMPTGTGKTI ALLSLITSYR LSRPDSPIKL VYCTRTVHEM EKTLGELKLL HDYQVRHLGT
101: QAKILALGLS SRKNLCVNTK VLAAENRDSV DAACRKRTAS WVRALSTENP NVELCDFFEN YEKAAENALL PPGVYTLEDL RAFGKNRGWC PYFLARHMIQ
201: FANVIVYSYQ YLLDPKVAGF ISKELQKESV VVFDEAHNID NVCIEALSVS VRRVTLEGAN RNLNKIRQEI DRFKATDAGR LRAEYNRLVE GLALRGDLSG
301: GDQWLANPAL PHDILKEAVP GNIRRAEHFV HVLRRLLQYL GVRLDTENVE KESPVSFVSS LNSQAGIEQK TLKFCYDRLQ SLMLTLEITD TDEFLPIQTV
401: CDFATLVGTY ARGFSIIIEP YDERMPHIPD PILQLSCHDA SLAIKPVFDR FQSVVITSGT LSPIDLYPRL LNFTPVVSRS FKMSMTRDCI CPMVLTRGSD
501: QLPVSTKFDM RSDPGVVRNY GKLLVEMVSI VPDGVVCFFV SYSYMDGIIA TWNETGILKE IMQQKLVFIE TQDVVETTLA LDNYRRACDC GRGAVFFSVA
601: RGKVAEGIDF DRHYGRLVVM YGVPFQYTLS KILRARLEYL HDTFQIKEGD FLTFDALRQA AQCVGRVIRS KADYGMMIFA DKRYSRHDKR SKLPGWILSH
701: LRDAHLNLST DMAIHIAREF LRKMAQPYDK AGTMGRKTLL TQEDLEKMAE TGVQDMAY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)