AT2G43190.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.999 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : ribonuclease P family protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
ribonuclease P family protein; FUNCTIONS IN: ribonuclease activity, ribonuclease P activity, RNA binding; INVOLVED IN: tRNA processing, mRNA cleavage, rRNA processing; LOCATED IN: ribonuclease P complex, nucleolar ribonuclease P complex, ribonuclease MRP complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribonuclease P/MRP, subunit p29, eukaryotic/archaeal (InterPro:IPR002730), Ribonuclease P/MRP, p29 subunit, eukaryotic (InterPro:IPR016848); Has 293 Blast hits to 293 proteins in 155 species: Archae - 0; Bacteria - 0; Metazoa - 120; Fungi - 100; Plants - 34; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:17956220..17957833 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 33267.40 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 10.49 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.45 | ||||||||||||||||||||||||||||||||||||||||
| Length | 296 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGTETVVHDQ ARWAMAAMER RLAVAKAQLL QQQQQKNEKD KKGTSDVDVS MKESHQADSL PTPSKTSIKK VDPKDDDSVA YTKLSHPVDE NLLATNVKFS 101: SAKGTIVDKV LHNLLRSGDS AQKYLQGTKS VKLDNYILLD NFVQSRSSAS GSKKASQKDS KRSKSRMSMK RLKKSGALHI PKDLQKFDLF KPMHGMWESY 201: MMKLIKVTGK IQLSLTLLSA DLHGAFMFVA ECKIASFTGV QGIMVRETSE TFGIITRDDK FRVVPKKLSV FIIQLDCWKI TLHGDKFISR DNIVQR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)