AT2G03280.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:vacuole 0.642 What is SUBAcon? |
|
||||||||||||||||||||||||||||
Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||
Description (TAIR10) | protein_coding : O-fucosyltransferase family protein | ||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||
Computational Description (TAIR10) |
O-fucosyltransferase family protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: GDP-fucose protein O-fucosyltransferase (InterPro:IPR019378); BEST Arabidopsis thaliana protein match is: O-fucosyltransferase family protein (TAIR:AT1G14020.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | ||||||||||||||||||||||||||||
Protein Annotations |
|
||||||||||||||||||||||||||||
Coordinates (TAIR10) | chr2:-:996249..998239 | ||||||||||||||||||||||||||||
Molecular Weight (calculated) | 55633.80 Da | ||||||||||||||||||||||||||||
IEP (calculated) | 9.85 | ||||||||||||||||||||||||||||
GRAVY (calculated) | -0.24 | ||||||||||||||||||||||||||||
Length | 481 amino acids | ||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MSVVVGDRSE STLMRSDYKA PPSQAIPKAR LQVWFFRVCS CILVWTCLIQ LFWHSQIFTG LTNHISRFSL PVQSVPLPPP LPPRNYTSNG ILLVSCNGGL 101: NQMRAAICDM VTVARLLNLT LVVPELDKKS FWADTSDFED IFDIKHFIDS LRDEVRIIRR LPKRYSKKYG FKLFEMPPVS WSNDKYYLQQ VLPRFSKRKV 201: IHFVRSDTRL ANNGLSLDLQ RLRCRVNFQG LRFTPRIEAL GSKLVRILQQ RGSFVALHLR YEMDMLAFSG CTHGCTDEEA EELKKMRYAY PWWREKEIVS 301: EERRVQGLCP LTPEEAVLVL KALGFQKDTQ IYIAAGEIFG GAKRLALLKE SFPRIVKKEM LLDPTELQQF QNHSSQMAAL DFIVSVASNT FIPTYYGNMA 401: KVVEGHRRYL GFKKTILLDR KRLVELLDLH NNKTLSWDQF AVAVKDAHQG RRMGEPTHRK VISVRPKEED YFYANPQECI S |
||||||||||||||||||||||||||||
See Also |
|
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)