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AT2G03280.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
vacuole 0.642
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : O-fucosyltransferase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
O-fucosyltransferase family protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: GDP-fucose protein O-fucosyltransferase (InterPro:IPR019378); BEST Arabidopsis thaliana protein match is: O-fucosyltransferase family protein (TAIR:AT1G14020.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Protein Annotations
EMBL:AY600544EMBL:AY924736EMBL:CP002685EnsemblPlants:AT2G03280
EnsemblPlants:AT2G03280.1entrez:814857ExpressionAtlas:Q6E279GeneID:814857
GO:GO:0016021GO:GO:0016757Gramene:AT2G03280.1hmmpanther:PTHR31741
hmmpanther:PTHR31741:SF3HOGENOM:HOG000240134InterPro:IPR019378InterPro:IPR024709
KEGG:00514+2.4.1.221Pfam:PF10250PhylomeDB:Q6E279PIRSF:PIRSF009360
Proteomes:UP000006548RefSeq:NP_178427.2TAIR:AT2G03280TMHMM:TMhelix
UniGene:At.10455UniGene:At.71239unipathway:UPA00378UniProt:Q6E279
Coordinates (TAIR10) chr2:-:996249..998239
Molecular Weight (calculated) 55633.80 Da
IEP (calculated) 9.85
GRAVY (calculated) -0.24
Length 481 amino acids
Sequence (TAIR10)
(BLAST)
001: MSVVVGDRSE STLMRSDYKA PPSQAIPKAR LQVWFFRVCS CILVWTCLIQ LFWHSQIFTG LTNHISRFSL PVQSVPLPPP LPPRNYTSNG ILLVSCNGGL
101: NQMRAAICDM VTVARLLNLT LVVPELDKKS FWADTSDFED IFDIKHFIDS LRDEVRIIRR LPKRYSKKYG FKLFEMPPVS WSNDKYYLQQ VLPRFSKRKV
201: IHFVRSDTRL ANNGLSLDLQ RLRCRVNFQG LRFTPRIEAL GSKLVRILQQ RGSFVALHLR YEMDMLAFSG CTHGCTDEEA EELKKMRYAY PWWREKEIVS
301: EERRVQGLCP LTPEEAVLVL KALGFQKDTQ IYIAAGEIFG GAKRLALLKE SFPRIVKKEM LLDPTELQQF QNHSSQMAAL DFIVSVASNT FIPTYYGNMA
401: KVVEGHRRYL GFKKTILLDR KRLVELLDLH NNKTLSWDQF AVAVKDAHQG RRMGEPTHRK VISVRPKEED YFYANPQECI S
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)