AT1G55930.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:plastid 1.000 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : CBS domain-containing protein / transporter associated domain-containing protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
CBS domain-containing protein / transporter associated domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF21 (InterPro:IPR002550), Transporter-associated domain (InterPro:IPR005170), Cystathionine beta-synthase, core (InterPro:IPR000644); BEST Arabidopsis thaliana protein match is: CBS domain-containing protein / transporter associated domain-containing protein (TAIR:AT3G13070.1); Has 15725 Blast hits to 15720 proteins in 2584 species: Archae - 144; Bacteria - 11495; Metazoa - 247; Fungi - 139; Plants - 193; Viruses - 0; Other Eukaryotes - 3507 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr1:+:20918895..20922133 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 72933.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 5.37 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.03 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Length | 653 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MELDLSVLGR SFIVTRRNSS ITRPCIQSSN FSVRVLQRNK HRPLCFSTNP SNSSFIRFQK GCDFSHRCQF VVLSATGDHV GISQKHSDST EKVDSIRILL 101: KRGIVLGAVV CGVLFYGCGK VLASTSVVDV AFSKSILLLK NAWPKTSQVL KVLREQGLIL AVLLGLSAFF SMAETSITTL WPWKVRELAE KEPENGVFRM 201: LRSDVTRFLT TILIGTTVVN IAATALVTKA ATAIFGEAGV SAATGVMTVA ILLLTEITPK SVAVHNAQEV ARIVVRPVAW LSLILYPVGR VVTYLSMGIL 301: KILGLKGRSE PYVTEDELKL MLRGAELSGA IEEEEQDMIE NVLEIKDTHV REVMTPLVDV VAIDGSGSLV DFHNFWVTHQ YSRVPVFEQR IDNIVGIAYA 401: MDLLDYVPKG KLLESTTVVD MAHKPAFFVP DSMSVWNLLR EFRIRKVHMA VVLNEYGGTI GIVTLEDVVE EIVGEIFDEN DSKEEIQKKT GYIVMRAEGI 501: YDVDANTSID QLSEELNIKM AEGHQYETVS GFVCEAFGYI PKTGESVTVV LEKENWEEND EQDEGKHERQ DQKEKHQIYR LEILAGNARK VSAVRFERVS 601: DMDQVSEARD VKNMVPKFVR KWSSEEDSDG NLQAKNAVFD EHLIAETESM KKE |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)