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AT1G55930.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31932409 (2020): plastid
  • PMID:30962257 (2019): plastid
  • PMID:29967049 (2018): plastid
  • PMID:27137770 (2016): plastid plastid stroma
  • PMID:24872594 (2014): plastid plastid envelope plastid inner membrane
  • PMID:22923678 (2012): plastid
  • PMID:20061580 (2010): plastid plastid envelope
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : CBS domain-containing protein / transporter associated domain-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
CBS domain-containing protein / transporter associated domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF21 (InterPro:IPR002550), Transporter-associated domain (InterPro:IPR005170), Cystathionine beta-synthase, core (InterPro:IPR000644); BEST Arabidopsis thaliana protein match is: CBS domain-containing protein / transporter associated domain-containing protein (TAIR:AT3G13070.1); Has 15725 Blast hits to 15720 proteins in 2584 species: Archae - 144; Bacteria - 11495; Metazoa - 247; Fungi - 139; Plants - 193; Viruses - 0; Other Eukaryotes - 3507 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1253eggNOG:KOG2118EMBL:AC002304EMBL:AK229617
EMBL:BT006163EMBL:CP002684EnsemblPlants:AT1G55930EnsemblPlants:AT1G55930.1
entrez:842044Gene3D:3.30.465.10GeneID:842044Genevisible:Q84R21
GO:GO:0006810GO:GO:0009536GO:GO:0009941GO:GO:0016021
GO:GO:0016614GO:GO:0031969GO:GO:0050660Gramene:AT1G55930.1
hmmpanther:PTHR22777hmmpanther:PTHR22777:SF3HOGENOM:HOG000062297InParanoid:Q84R21
InterPro:IPR000644InterPro:IPR002550InterPro:IPR005170InterPro:IPR016166
InterPro:IPR016169iPTMnet:Q84R21KEGG:ath:AT1G55930OMA:MAEGHQY
PaxDb:Q84R21Pfam:PF00571Pfam:PF01595Pfam:PF03471
Pfam:Q84R21Pfscan:PS51371PIR:E96600PRIDE:Q84R21
PRO:PR:Q84R21PROSITE:PS51371ProteinModelPortal:Q84R21Proteomes:UP000006548
RefSeq:NP_175989.2SMART:SM01091SMR:Q84R21STRING:3702.AT1G55930.1
SUPFAM:SSF54631SUPFAM:SSF56176TAIR:AT1G55930TMHMM:TMhelix
UniGene:At.42867UniProt:Q84R21
Coordinates (TAIR10) chr1:+:20918895..20922133
Molecular Weight (calculated) 72933.00 Da
IEP (calculated) 5.37
GRAVY (calculated) -0.03
Length 653 amino acids
Sequence (TAIR10)
(BLAST)
001: MELDLSVLGR SFIVTRRNSS ITRPCIQSSN FSVRVLQRNK HRPLCFSTNP SNSSFIRFQK GCDFSHRCQF VVLSATGDHV GISQKHSDST EKVDSIRILL
101: KRGIVLGAVV CGVLFYGCGK VLASTSVVDV AFSKSILLLK NAWPKTSQVL KVLREQGLIL AVLLGLSAFF SMAETSITTL WPWKVRELAE KEPENGVFRM
201: LRSDVTRFLT TILIGTTVVN IAATALVTKA ATAIFGEAGV SAATGVMTVA ILLLTEITPK SVAVHNAQEV ARIVVRPVAW LSLILYPVGR VVTYLSMGIL
301: KILGLKGRSE PYVTEDELKL MLRGAELSGA IEEEEQDMIE NVLEIKDTHV REVMTPLVDV VAIDGSGSLV DFHNFWVTHQ YSRVPVFEQR IDNIVGIAYA
401: MDLLDYVPKG KLLESTTVVD MAHKPAFFVP DSMSVWNLLR EFRIRKVHMA VVLNEYGGTI GIVTLEDVVE EIVGEIFDEN DSKEEIQKKT GYIVMRAEGI
501: YDVDANTSID QLSEELNIKM AEGHQYETVS GFVCEAFGYI PKTGESVTVV LEKENWEEND EQDEGKHERQ DQKEKHQIYR LEILAGNARK VSAVRFERVS
601: DMDQVSEARD VKNMVPKFVR KWSSEEDSDG NLQAKNAVFD EHLIAETESM KKE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)