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AT1G50840.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 0.500
plastid 0.500
ASURE: mitochondrion,plastid
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : polymerase gamma 2
Curator
Summary (TAIR10)
DNA Polymerase gamma2. Dual targeting to mitochondria and plastids due to alternative translation initiation.
Computational
Description (TAIR10)
polymerase gamma 2 (POLGAMMA2); FUNCTIONS IN: DNA binding, DNA-directed DNA polymerase activity; INVOLVED IN: DNA replication, nucleobase, nucleoside, nucleotide and nucleic acid metabolic process; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA-directed DNA polymerase, family A, palm domain (InterPro:IPR001098), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), DNA polymerase A domain (InterPro:IPR002298), 3'-5' exonuclease (InterPro:IPR002562); BEST Arabidopsis thaliana protein match is: polymerase gamma 1 (TAIR:AT3G20540.1); Has 11974 Blast hits to 10011 proteins in 2572 species: Archae - 0; Bacteria - 6712; Metazoa - 149; Fungi - 0; Plants - 122; Viruses - 286; Other Eukaryotes - 4705 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G50840-MONOMEREC:2.7.7.7eggNOG:COG0749eggNOG:ENOG410IPH2
EMBL:AB211532EMBL:AC079284EMBL:AF462826EMBL:AY091072
EMBL:CP002684EnsemblPlants:AT1G50840EnsemblPlants:AT1G50840.1entrez:841506
Gene3D:3.30.420.10GeneID:841506Genevisible:F4I6M1GO:GO:0003677
GO:GO:0003887GO:GO:0005739GO:GO:0006264GO:GO:0006281
GO:GO:0008408GO:GO:0008409GO:GO:0009507GO:GO:0033259
GO:GO:0071897GO:GO:0090305Gramene:AT1G50840.1hmmpanther:PTHR10133
hmmpanther:PTHR10133:SF34HOGENOM:HOG000242613InParanoid:F4I6M1InterPro:IPR001098
InterPro:IPR002298InterPro:IPR002562InterPro:IPR012337KEGG:00230+2.7.7.7
KEGG:00240+2.7.7.7KEGG:ath:AT1G50840KO:K02335OMA:IDMFTPT
PaxDb:F4I6M1Pfam:F4I6M1Pfam:PF00476Pfam:PF01612
PIR:D96545PRIDE:F4I6M1PRINTS:PR00868PRO:PR:F4I6M1
ProteinModelPortal:F4I6M1Proteomes:UP000006548RefSeq:NP_175498.2SMART:SM00482
SMR:F4I6M1STRING:3702.AT1G50840.1SUPFAM:SSF53098SUPFAM:SSF56672
TAIR:AT1G50840tair10-symbols:POLGAMMA2UniGene:At.28263UniGene:At.65769
UniProt:F4I6M1
Coordinates (TAIR10) chr1:+:18839277..18844313
Molecular Weight (calculated) 117240.00 Da
IEP (calculated) 6.97
GRAVY (calculated) -0.47
Length 1050 amino acids
Sequence (TAIR10)
(BLAST)
0001: MAMGVSLTSH NNPLLRHLSP SSSWVSRSSS RLSSSPLPSF LFPCRRTLLQ RKLASTDGNV GYCTTTVCQG FQHSVHQRSS SVVFNGEWEL RSESNKVRMV
0101: PKIIKVGNQT EVAETHQVPG TVSAWREEAN KLRERNGQIA RNLDDNGYFN GSVPIISSAP SYETSQKIDY EFKPRGTTRS TTATLNKELI GITQSEPVVS
0201: LPRKGLDVGD NMDVNPKGEG IQRPLISDKS SGTANGNKNT VAISKVERST EPSNVRENLG KIYDKVLIVD NVQAAKDTVA KLVNQFRNHV HSCDTEVSGI
0301: EVKEETPVDH GELICFSIYC GPEADFGNGK SCIWVDVLGE NGREVLAEFK PYFEDSFIRK VWHNYSFDSH IIRNHGIEIS GFHADTMHMA RLWDSARRIK
0401: GGYSLEALTS DPKVLGGTQT KEEAEFLGKI SMKTIFGKRK LKKDGSEGKI VVIPPVEELQ REDREAWISY SALDAISTLK LYESMTKKLQ LMDWHLDGKP
0501: VLGRTMLDFY HEFWRPFGEL LVKMEAEGIL VDREYLAEIE KVAKAEQQVA GSRFRNWASK YCPDAKYMNI GSDTQLRQLF FGGISNSHDE VLPVEKLFKV
0601: PNIDKVIEEG KKTPTKFRNI KLHRISDSPL STENFTASGW PSVGGDVLKE LAGKVSAEYD FMDDVSDISL EEVVEDDDVE TSETQKSKTD DETDTSAYGT
0701: AYVAFGGGER GKEACHAIAS LCEVCSIDSL ISNFILPLQG SNVSGKDGRV HCSLNINTET GRLSARRPNL QNQPALEKDR YKIRKAFVAS PGNTLVVADY
0801: GQLELRILAH LTGCKSMMEA FKAGGDFHSR TAMNMYPHVR EAVENGQVIL EWHPEPGEDK PPVPLLKDAF GSERRKAKML NFSIAYGKTA VGLSRDWKVS
0901: TKEAQETVDL WYNDRQEVRK WQEMRKKEAI EDGYVLTLLG RSRRFPASKS RAQRNHIQRA AINTPVQGSA ADVAMCAMLE ISINQQLKKL GWRLLLQIHD
1001: EVILEGPIES AEIAKDIVVD CMSKPFNGRN ILSVDLSVDA KCAQNWYAAK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)