AT1G50840.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:mitochondrion 0.500 plastid 0.500 ASURE: mitochondrion,plastid What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : polymerase gamma 2 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
DNA Polymerase gamma2. Dual targeting to mitochondria and plastids due to alternative translation initiation. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Computational Description (TAIR10) |
polymerase gamma 2 (POLGAMMA2); FUNCTIONS IN: DNA binding, DNA-directed DNA polymerase activity; INVOLVED IN: DNA replication, nucleobase, nucleoside, nucleotide and nucleic acid metabolic process; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA-directed DNA polymerase, family A, palm domain (InterPro:IPR001098), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), DNA polymerase A domain (InterPro:IPR002298), 3'-5' exonuclease (InterPro:IPR002562); BEST Arabidopsis thaliana protein match is: polymerase gamma 1 (TAIR:AT3G20540.1); Has 11974 Blast hits to 10011 proteins in 2572 species: Archae - 0; Bacteria - 6712; Metazoa - 149; Fungi - 0; Plants - 122; Viruses - 286; Other Eukaryotes - 4705 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr1:+:18839277..18844313 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 117240.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 6.97 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.47 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Length | 1050 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
0001: MAMGVSLTSH NNPLLRHLSP SSSWVSRSSS RLSSSPLPSF LFPCRRTLLQ RKLASTDGNV GYCTTTVCQG FQHSVHQRSS SVVFNGEWEL RSESNKVRMV 0101: PKIIKVGNQT EVAETHQVPG TVSAWREEAN KLRERNGQIA RNLDDNGYFN GSVPIISSAP SYETSQKIDY EFKPRGTTRS TTATLNKELI GITQSEPVVS 0201: LPRKGLDVGD NMDVNPKGEG IQRPLISDKS SGTANGNKNT VAISKVERST EPSNVRENLG KIYDKVLIVD NVQAAKDTVA KLVNQFRNHV HSCDTEVSGI 0301: EVKEETPVDH GELICFSIYC GPEADFGNGK SCIWVDVLGE NGREVLAEFK PYFEDSFIRK VWHNYSFDSH IIRNHGIEIS GFHADTMHMA RLWDSARRIK 0401: GGYSLEALTS DPKVLGGTQT KEEAEFLGKI SMKTIFGKRK LKKDGSEGKI VVIPPVEELQ REDREAWISY SALDAISTLK LYESMTKKLQ LMDWHLDGKP 0501: VLGRTMLDFY HEFWRPFGEL LVKMEAEGIL VDREYLAEIE KVAKAEQQVA GSRFRNWASK YCPDAKYMNI GSDTQLRQLF FGGISNSHDE VLPVEKLFKV 0601: PNIDKVIEEG KKTPTKFRNI KLHRISDSPL STENFTASGW PSVGGDVLKE LAGKVSAEYD FMDDVSDISL EEVVEDDDVE TSETQKSKTD DETDTSAYGT 0701: AYVAFGGGER GKEACHAIAS LCEVCSIDSL ISNFILPLQG SNVSGKDGRV HCSLNINTET GRLSARRPNL QNQPALEKDR YKIRKAFVAS PGNTLVVADY 0801: GQLELRILAH LTGCKSMMEA FKAGGDFHSR TAMNMYPHVR EAVENGQVIL EWHPEPGEDK PPVPLLKDAF GSERRKAKML NFSIAYGKTA VGLSRDWKVS 0901: TKEAQETVDL WYNDRQEVRK WQEMRKKEAI EDGYVLTLLG RSRRFPASKS RAQRNHIQRA AINTPVQGSA ADVAMCAMLE ISINQQLKKL GWRLLLQIHD 1001: EVILEGPIES AEIAKDIVVD CMSKPFNGRN ILSVDLSVDA KCAQNWYAAK |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)