AT3G61780.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : embryo defective 1703 | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
embryo defective 1703 (emb1703); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G28400.1); Has 1076 Blast hits to 906 proteins in 181 species: Archae - 8; Bacteria - 72; Metazoa - 301; Fungi - 122; Plants - 81; Viruses - 2; Other Eukaryotes - 490 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:22867814..22871462 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 127928.00 Da | ||||||||||||||||||||||||
| IEP (calculated) | 5.38 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.79 | ||||||||||||||||||||||||
| Length | 1121 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MEVLLNSNDG FFNFSSFSSN SNRRLANQRR FNLPISKFHY YRVSILRVSA RFGETSRRRN SLRKKIIGDE YWRSTPKSSE PGTKPLNESH KFGHCDDLSS 0101: TEGLKDRVAQ DSNLLNELED WVARYNKEAE FWGIGSNPIF TVYQDSVGNV EKVEVDEDEV LSRRRSALGD LESVSSKLVY AKKLAEQMEN GEHVIHKESS 0201: LVKFVSSSSS SEEEFRLVSS VQNAILRLDL IPKLPAIGRA VLCGYIGLWL LKTVLVYRKS NEVECTELEK EMMRRKMKAW QERDMSEKGT VEVLHKEGLE 0301: KPLMSFEKPK FDRNELMTSI SKVKGSEKKL ELVNSPHVEL DFVDKIHEIK AMARRAREIE AGIELNEKQK LDVNKETGDN EEDISIQSQK SLPHEALTHS 0401: EGDDDKDERL GTSTDSENTE LSGFAVPMLN GAMVDFGFLN HEMAASDKEK VSNVVPPVPT DGVIQSSDVS KDQLSMMKNS TGRKSRVIRS VKEAKEFLSR 0501: RSGEKELTQE PSQMIAQDSV EIFSKQSDEE RGVARKHELV DKNKILGAAV NGTLKSALES TSSEPLGKDA DCQPQKNDYQ KLSEPGNAVK GSSKQINSSN 0601: KIEEHNFKFA KSSSGGTEHI EKEEPSGKGN WIENNYHEFE PVVEKMRAGF RDNYMAAREG ETREPGTIAE IAELYRSEYN DELEWMKDEK LRDIVFHVRD 0701: NELAGRDPFH LIDDEDKAMF LQGLEKKVEK ENEKLSHLHQ WIHSNIENLD YGVDGVSVYD PLEKIIPRWK GPSLDKNPEF LNNYHEQREA LFSEKAASVS 0801: PVKYEEQSSH QELSESASSE NTLTPSSEIT SSQPKIVVEG SDGSVRPGKK SGKEYWQHTK KWSRGFLELY NAETDPEVKA VMRDMGKDLD RWITEDEIKD 0901: AADIMEKLPE RNKKFMEKKL NKLKREMELF GPQAVLSKYR EYGEDKEEDY LWWLDLPHVL CLELYTVDEN GEQQVGFYTL EMATDLELEP KPHHVIAFED 1001: AADCRNLCYI IQAHLDMLRS GNVFIVPRPP KDAYREAKAN GFGVTVIRKG ELKLNIDEPL EEVEEEICEI GSKMYHDKIM GERSVDISSL MKGVFNLKTK 1101: PTGRRRKRSK QALKDSNKKS S |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)