AT2G20020.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : RNA-binding CRS1 / YhbY (CRM) domain-containing protein | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Promotes the splicing of chloroplast group II introns. Splices clpP-1 and ropC1 introns. | ||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
CAF1; FUNCTIONS IN: RNA binding; INVOLVED IN: Group II intron splicing; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA-binding, CRM domain (InterPro:IPR001890); BEST Arabidopsis thaliana protein match is: RNA-binding CRS1 / YhbY (CRM) domain-containing protein (TAIR:AT1G23400.1); Has 330 Blast hits to 282 proteins in 47 species: Archae - 0; Bacteria - 32; Metazoa - 20; Fungi - 4; Plants - 265; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr2:+:8644464..8647090 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 79059.20 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.75 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.74 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 701 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSLKLNTPFP IFAPSLFPNH NPRAPSEIRF SRWGNANAER FEQRRRSQEE LEAEIRRDRR FDAATKIVHT HDSEAAAAEP KTSPFRSRGT PSLPSARSIP 101: GRRSKYSKPD SGPNRPKNKP RVPDSPPQLD AKPEVKLSED GLTYVINGAP FEFKYSYTET PKVKPLKLRE PAYAPFGPTT MGRPWTGRAP LPQSQKTPRE 201: FDSFRLPPVG KKGLKPVQKP GPFRPGVGPR YVYSKEEILG EPLTKEEVRE LVTSCLKTTR QLNMGRDGLT HNMLNNIHDL WKRRRVCKIK CKGVCTVDMD 301: NVCEQLEEKI GGKVIYRRGG VLFLFRGRNY NHRTRPRFPL MLWKPVAPVY PRLIQQVPEG LTRQEATNMR RKGRELMPIC KLGKNGVYCD LVKNVKEAFE 401: VCELVRIDCQ GMKGSDFRKI GAKLKDLVPC VLVSFENEQI LIWRGREWKS SLTTPDKKGD ILEDIEVDTA LPEDDEPSVS PNQSQTMTQN PPLDSMELQN 501: DPDGHDLSPS TVDSSEMEGT INSLQSWSTK DVTEPTVDSF LRDLEEPEDE PETSEEISKQ SIERVLILMK QAVESGTALV LDAADLDADT VFSKAVAFSS 601: VASPGPVFQH GLRKQPTVKK QESQEFGYGD LEAKSSNVVV SRNASKSSNV VVFGKREVAE RGEREEKEEG SKKKMDEFAE DYREVMPHGT LKVDELAKLL 701: A |
||||||||||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)