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AT2G24120.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : DNA/RNA polymerases superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
SCABRA 3 (SCA3); FUNCTIONS IN: DNA-directed RNA polymerase activity, protein binding, DNA binding; INVOLVED IN: transcription; LOCATED IN: mitochondrion; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA-directed RNA polymerase, bacteriophage type (InterPro:IPR002092); BEST Arabidopsis thaliana protein match is: male gametophyte defective 3 (TAIR:AT1G68990.1); Has 1315 Blast hits to 1296 proteins in 334 species: Archae - 0; Bacteria - 38; Metazoa - 134; Fungi - 224; Plants - 204; Viruses - 139; Other Eukaryotes - 576 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT2G24120-MONOMERBioCyc:ARA:GQT-1347-MONOMERBioGrid:2298EC:2.7.7.6
eggNOG:COG5108eggNOG:KOG1038EMBL:AC005967EMBL:CP002685
EMBL:Y08463EMBL:Y08722EnsemblPlants:AT2G24120EnsemblPlants:AT2G24120.1
entrez:816946ExpressionAtlas:O24600Gene3D:1.10.1320.10Gene3D:1.10.287.260
GeneID:816946Genevisible:O24600GO:GO:0003677GO:GO:0003899
GO:GO:0005739GO:GO:0006351GO:GO:0009507hmmpanther:PTHR10102
hmmpanther:PTHR10102:SF1HOGENOM:HOG000241996InParanoid:O24600IntAct:O24600
InterPro:IPR002092InterPro:IPR024075InterPro:IPR029262KEGG:00230+2.7.7.6
KEGG:00240+2.7.7.6KEGG:ath:AT2G24120KO:K10908ncoils:Coil
OMA:HMLIPYVPANTHER:PTHR10102PaxDb:O24600PaxDb:Q0WN04
Pfam:O24600Pfam:PF00940Pfam:PF14700PhylomeDB:O24600
PIR:G84632PRIDE:O24600PRO:PR:O24600PROSITE:PS00489
PROSITE:PS00900ProteinModelPortal:O24600Proteomes:UP000006548RefSeq:NP_179989.1
scanprosite:PS00489scanprosite:PS00900SMART:SM01311SMR:O24600
SMR:Q0WN04STRING:3702.AT2G24120.1SUPFAM:SSF56672TAIR:AT2G24120
tair10-symbols:PDE319tair10-symbols:SCA3UniGene:At.21683UniProt:O24600
UniProt:Q0WN04
Coordinates (TAIR10) chr2:-:10249358..10254530
Molecular Weight (calculated) 112630.00 Da
IEP (calculated) 9.70
GRAVY (calculated) -0.42
Length 993 amino acids
Sequence (TAIR10)
(BLAST)
001: MASAAAASPS LSLNPTSHFQ HQTSLVTWLK PPPSSALFRR KTLPFFERHS LPISASSSSS SSSSTSLSVH EKPISNSVHF HGNLIESFEN QDSSYAGTIK
101: GASLIEELEN PVERNGLSGR RRLFMQDPPW ISALFLKGLS KMVDQTLKIE RKDIDKRKFD SLRRRQVKEE TEAWERMVDE YRDLEKEMCE KNLAPNLPYV
201: KHMFLGWFQP LKDVIEREQK LQKNKSKKVR AAYAPHIELL PADKMAVIVM HKMMGLVMSG HEDGCIQVVQ AAVSIGIAIE QEVRIHNFLK RTRKNNAGDS
301: QEELKEKQLL RKRVNSLIRR KRIIDALKVV KSEGTKPWGR ATQAKLGSRL LELLIEAAYV QPPLTQSGDS IPEFRPAFRH RFKTVTKYPG SKLVRRYGVI
401: ECDSLLLAGL DKSAKHMLIP YVPMLVPPKR WKGYDKGGYL FLPSYIMRTH GSKKQQDALK DISHKTAHRV FEALDTLGNT KWRVNRNILD VVERLWADGG
501: NIAGLVNRED VPIPEKPSSE DPEELQSWKW SARKANKINR ERHSLRCDVE LKLSVARKMK DEEGFYYPHN LDFRGRAYPM HPHLNHLSSD LCRGTLEFAE
601: GRPLGKSGLH WLKIHLANLY AGGVEKLSHD ARLAFVENHL DDIMDSAENP IHGKRWWLKA EDPFQCLAAC VILTQALKSP SPYSVISHLP IHQDGSCNGL
701: QHYAALGRDS FEAAAVNLVA GEKPADVYSE ISRRVHEIMK KDSSKDPESN PTAALAKILI TQVDRKLVKQ TVMTSVYGVT YVGAREQIKR RLEEKGVITD
801: ERMLFAAACY SAKVTLAALG EIFEAARAIM SWLGDCAKII ASDNHPVRWI TPLGLPVVQP YCRSERHLIR TSLQVLALQR EGNTVDVRKQ RTAFPPNFVH
901: SLDGTHMMMT AVACREAGLN FAGVHDSYWT HACDVDTMNR ILREKFVELY NTPILEDLLQ SFQESYPNLV FPPVPKRGDF DLKEVLKSQY FFN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)