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AT5G23430.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.633
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Transducin/WD40 repeat-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT5G08390.1); Has 113433 Blast hits to 41213 proteins in 1020 species: Archae - 84; Bacteria - 12091; Metazoa - 46348; Fungi - 25039; Plants - 14792; Viruses - 6; Other Eukaryotes - 15073 (source: NCBI BLink).
Protein Annotations
BioGrid:17684eggNOG:ENOG410XQACeggNOG:KOG0267EMBL:AB018110
EMBL:BT002053EMBL:CP002688EnsemblPlants:AT5G23430EnsemblPlants:AT5G23430.1
entrez:832409Gene3D:2.130.10.10GeneID:832409Genevisible:Q8H0T9
GO:GO:0005874GO:GO:0008352GO:GO:0051013GO:GO:0080008
HAMAP:MF_03022hmmpanther:PTHR19845hmmpanther:PTHR19845:SF0HOGENOM:HOG000008039
InParanoid:Q8H0T9IntAct:Q8H0T9InterPro:IPR001680InterPro:IPR015943
InterPro:IPR017986InterPro:IPR019775InterPro:IPR020472InterPro:IPR026962
InterPro:IPR028021iPTMnet:Q8H0T9KEGG:ath:AT5G23430KO:K18643
OMA:STMPLQNPANTHER:PTHR19845:SF0PaxDb:Q8H0T9Pfam:PF00400
Pfam:PF13925Pfam:Q8H0T9Pfscan:PS50082Pfscan:PS50294
PhylomeDB:Q8H0T9PRIDE:Q8H0T9PRINTS:PR00320PRO:PR:Q8H0T9
PROSITE:PS00678PROSITE:PS50082PROSITE:PS50294ProteinModelPortal:Q8H0T9
Proteomes:UP000006548RefSeq:NP_197734.2RefSeq:NP_851064.1scanprosite:PS00678
SMART:SM00320SMR:Q8H0T9STRING:3702.AT5G23430.1SUPFAM:SSF50978
TAIR:AT5G23430UniGene:At.45963UniProt:Q8H0T9
Coordinates (TAIR10) chr5:-:7894073..7899862
Molecular Weight (calculated) 91439.00 Da
IEP (calculated) 8.78
GRAVY (calculated) -0.46
Length 837 amino acids
Sequence (TAIR10)
(BLAST)
001: MTTKRAYKLQ EFVAHSAAVN CLKIGRKSSR VLVTGGEDHK VNLWAIGKPN AILSLYGHSS GIDSVTFDAS EVLVAAGAAS GTIKLWDLEE AKIVRTLTGH
101: RSNCISVDFH PFGEFFASGS LDTNLKIWDI RKKGCIHTYK GHTRGVNVLR FTPDGRWVVS GGEDNIVKVW DLTAGKLLTE FKSHEGQIQS LDFHPHEFLL
201: ATGSADRTVK FWDLETFELI GSGGPETAGV RCLSFNPDGK TVLCGLQESL KIFSWEPIRC HDGVDVGWSR LSDMNVHEGK LLGCSYNQSC VGVWVVDLSR
301: TEPCMAGDTA QSNGHPEKRS CSGRDPVVLN DNNSKTVLGK LSVSQNVDPL LKETKSLGRL SVSQNSDPST KETKSIGRSS TSQNSESSMK ESKPLGRLSV
401: SQNSDVSKES RTFSSTGSLP GTPHRVSSTN VSKATSGVST AVSNAATSRR NFTKANPKAN PVNKAADFAP VIVPRADPRI EQATESRAEL DIIARTMPYS
501: LQAADSRRSP SSRNNPDLPD ASVLEMSESQ PVEPNNIPDG GTLPGGKVGM RGATERSIND FRYKRYGRSN SRSRMGSPPR NHDENYDLVS HRSNRDPSPT
601: ESQKGGRFQS LVINRERRGR FSNFEGPVSN FSSGNMPAPN IRPSNMFKQR GNHMPVEQGI DSPSEENIVE DIMGKHNQFV SSMQSRLAKL QVVRRYWERN
701: DVKNSIGSIE KMADNAVTAD VLGIITERNE ILTLDNCTSL LPLLTALLGS GMDQHLSVSL DLLLKLVRLY GSPIYSSLSA PASVGVDIEA EQRIERYSRC
801: FVELEKVKAC LPSLARRGGL VAKSVLELNL AFQEVSS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)