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AT3G62300.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : DOMAIN OF UNKNOWN FUNCTION 724 7
Curator
Summary (TAIR10)
Member of the plant-specific DUF724 protein family. Arabidopsis has 10 DUF724 proteins. Loss of function mutant has a WT phenotype
Computational
Description (TAIR10)
DOMAIN OF UNKNOWN FUNCTION 724 7 (DUF7); FUNCTIONS IN: RNA binding; LOCATED IN: nucleus; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Tudor-like, plant (InterPro:IPR014002), Agenet (InterPro:IPR008395), Protein of unknown function DUF724 (InterPro:IPR007930); BEST Arabidopsis thaliana protein match is: DOMAIN OF UNKNOWN FUNCTION 724 6 (TAIR:AT2G47230.1); Has 299 Blast hits to 227 proteins in 36 species: Archae - 0; Bacteria - 4; Metazoa - 29; Fungi - 0; Plants - 252; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IS6EeggNOG:ENOG410YXA1EMBL:BT002019EMBL:CP002686
EnsemblPlants:AT3G62300EnsemblPlants:AT3G62300.1entrez:825403ExpressionAtlas:Q8H0V4
GeneID:825403Gramene:AT3G62300.1hmmpanther:PTHR31917hmmpanther:PTHR31917:SF4
HOGENOM:HOG000114080InterPro:IPR007930InterPro:IPR008395InterPro:IPR014002
ncoils:CoilPfam:PF05266Pfam:PF05641PhylomeDB:Q8H0V4
Proteomes:UP000006548RefSeq:NP_191789.2SMART:SM00743STRING:3702.AT3G62300.2
TAIR:AT3G62300tair10-symbols:ATDUF7tair10-symbols:DUF7UniGene:At.34140
UniProt:Q8H0V4
Coordinates (TAIR10) chr3:+:23054247..23057081
Molecular Weight (calculated) 80744.50 Da
IEP (calculated) 7.36
GRAVY (calculated) -0.48
Length 722 amino acids
Sequence (TAIR10)
(BLAST)
001: MLLTTGRKEK LSVSKGSEIE ISSQEYEYGS GNVWYCVILE ENLAKSKRKK LSVRHLDPLL KYDYSPPLIK TTVHRFMRPV PPPDPFPEVD FEEGDVVDAA
101: YKGGWCSGSV VKVLGNRRFL VYLRFQPDVI ELLRKDLRPH FVWKDEEWFR CEKQQLIESD FSAGKSVEVR TKVDKLGDVW APAMVIKEDE DGTMLVKLKT
201: LKEEEVNCTK ISVSYSEIRP SPLPIGLRDY KLMENVDALV ESGWCPGVVS KVLAGKRYAV DLGPNRESKE FSRLQLRPSI EWKDGIWHRK EKVSGSEESS
301: HAVEETAAST RIRITVRTAL KEKKALGTGI NVRTTRSSSG AMHNPLPASF NGGDVAEAGR VSVTVNETPL FETAALSGEL GNSLADVVMN ESAPVTSQPE
401: IAAPKEFHPS VVLGVAAAVK TQGKTTPKKK LQAMKNQKSS TNDSVGEKVS VNKRKRGQPR KFIVAEPKQK IGVSGNNSKA ATIEHADMTD DDRPLASWVH
501: TGNSSSGQSV SRTPDIGLNT VVEKHVDIVE TPPGRESTMV LPFVKKSQLW KVLESMEVFK VVPQSPHFSP LLESEEECRE GDAIGRMVMF SSLLEKVNNL
601: QVDDPISSIN RIDECFLKLE KHGFNVTTPR SRIAKILSIK ERQTCALEEL KAVEEKITEN DNKRRKYEED IVELQRQEVL MKEAKVTLDN EIARMQSQAA
701: VLDQEVQNVD HEFQAILAAP WK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)