suba logo
AT3G57350.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30961429 (2019): nucleus
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Nucleoporin interacting component (Nup93/Nic96-like) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Nucleoporin interacting component (Nup93/Nic96-like) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: transport; LOCATED IN: nuclear pore; CONTAINS InterPro DOMAIN/s: Nucleoporin interacting component Nup93/Nic96 (InterPro:IPR007231); BEST Arabidopsis thaliana protein match is: Nucleoporin interacting component (Nup93/Nic96-like) family protein (TAIR:AT2G41620.1); Has 310 Blast hits to 299 proteins in 130 species: Archae - 0; Bacteria - 4; Metazoa - 145; Fungi - 101; Plants - 51; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).
Protein Annotations
BioGrid:10218eggNOG:ENOG410XPN3eggNOG:KOG2168EMBL:AL137080
EMBL:CP002686EnsemblPlants:AT3G57350EnsemblPlants:AT3G57350.1entrez:824902
GeneID:824902GO:GO:0005643GO:GO:0015031GO:GO:0051028
Gramene:AT3G57350.1hmmpanther:PTHR11225InParanoid:Q9M2L2InterPro:IPR007231
iPTMnet:F4J284KEGG:ath:AT3G57350KO:K14309OMA:KVLEEDC
PANTHER:PTHR11225PaxDb:F4J284Pfam:F4J284Pfam:PF04097
PIR:T45813PRIDE:F4J284PRO:PR:F4J284ProteinModelPortal:F4J284
Proteomes:UP000006548RefSeq:NP_191294.5STRING:3702.AT3G57350.1TAIR:AT3G57350
UniGene:At.28594UniGene:At.53966UniGene:At.71789UniProt:F4J284
Coordinates (TAIR10) chr3:-:21220606..21225305
Molecular Weight (calculated) 96423.20 Da
IEP (calculated) 7.01
GRAVY (calculated) -0.38
Length 860 amino acids
Sequence (TAIR10)
(BLAST)
001: MANDQEMSGW TDLLHSSTKL LEQAAPSSQF PPLQRNLDQL EALSRKLKAK TLRNEAPSQS IAATRLLARE GINADQLSRD LKSFELKTTF EDVFPAETTS
101: VEEYLQQVHE MAMVSAIQEA QKDNVRSFNN YMLKVLEEDC IKEKRDFLHS LSKTSMLPKT KMINSSRGSH AGSLVPLSPQ VSSKPGTELV SMTNKPIHEK
201: KAYVYAEVVK KLNSARERGL PFKLATLFNG AYESLEIDLT RGKSVNMQKL WQLIQGMTGE ESAVQHGVSK RMALVIGARR HLECGHGKHI MDTIQSHPTQ
301: AALGGSVGNL QRIRAFLRIR LRDYGSLDFD SVDARRQPPV DTTWQQIYFC LRTGYYEEAR EIAQSSRSSQ QQFAPLLTEW ITTGGTVAAQ TAATASEECE
401: KLLRMGDRFG QTTYDKKKLL LYTIISGSRR QIDRIMRDFS TLFNTIEDFL WFKLSCVRDV AGGSSSMIVN DGLVPYSLDD LQAYLNKFEP SYYTKNGKDP
501: LVYPYVLLLS IQLLPAIMHM SNEAGDEGYN IDAVHVAISL VDHSILSEGS GTGRKLSVMD ANAEASSMIR QYGSMYLHHG DLQMTLEYYA QAAIAVGGGQ
601: QAWSGRSNVD QQRQRNLMLK QLLTEILSQE DGIHFLLGAR GSGEEGELGR FLPDIKLRQQ FLIEAAHQFQ EAGLYDKSIE LQKRVGAFSS ALETINKCLS
701: EAICSLVRGR PDGESRTEGL VLSGNDILNS YKYHPDVSAQ ERHLVMEQET ILRELEAILS IHKLARLNKH LDAIREVAKL PFLHLDPRQP DTTSDEFQKA
801: SSYFQTCVPD LLKVALTCLD NVADTDGSIR GMRSKIAGFL ASNTQRNWPR DLYEKIARSF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)