AT1G06560.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : NOL1/NOP2/sun family protein | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
NOL1/NOP2/sun family protein; FUNCTIONS IN: methyltransferase activity, RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p (InterPro:IPR001678), Pseudouridine synthase/archaeosine transglycosylase-like (InterPro:IPR015947), Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p, conserved site (InterPro:IPR018314), Pseudouridine synthase/archaeosine transglycosylase (InterPro:IPR002478); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT4G26600.1); Has 13569 Blast hits to 8411 proteins in 2331 species: Archae - 604; Bacteria - 9970; Metazoa - 826; Fungi - 418; Plants - 360; Viruses - 0; Other Eukaryotes - 1391 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:2007660..2011824 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 65516.20 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.03 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.30 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 599 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSKARVLLKP SSLTTCLTRA KAFFSSVSQS RSISHQMEMG PSDSERYCYD PVLRWNPEVE DYFTKAYGPD HFARISKALT RPSSYSCIRV NTVKTTSDAV 101: IEKLTKILND SEEGLKLVQP DGSSPVTKCQ IPGLDYVVFV NGSGPHKIEY DSGLENPPKE VLVSRKCAEA VLRGAQVYVP GVLACTAHVE KGDAVAVCVA 201: MEQPGDEGDW SVNMTRGTTL QGLPTDPYYR ERSGLYIGMG TAMLSRAGMF RVPNGIAVDL NHRVFRLPSL HNILEGEIFL QNLPSIIVAH ALDPQKGERI 301: LDMCAAPGGK TTAIAILMND EGEIVAADRS HNKVLVVQNL SAEMGFTCIT TCKLDALKSV CLPTTLNEST ILINGDNSSS MTSHSELSSN EEMTSVTSRR 401: SEADKSCEKN DSTEQPNGGD NVSQAYIRKN KGRLKNGRGR TQCQGGRAGK SQGFPPNSFD RVLLDAPCSA LGLRPRLFAG LETVVSLRNH GWYQRKMLDQ 501: AVQLVRVGGI LVYSTCTINP SENEAVVRYA LDKYRFLSLA PQHPRIGGPG LVGRCEFPDG YIEEWLKPGE EELVQKFDPS SELDTIGFFI AKFSVGPKD |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)