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AT1G06560.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : NOL1/NOP2/sun family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
NOL1/NOP2/sun family protein; FUNCTIONS IN: methyltransferase activity, RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p (InterPro:IPR001678), Pseudouridine synthase/archaeosine transglycosylase-like (InterPro:IPR015947), Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p, conserved site (InterPro:IPR018314), Pseudouridine synthase/archaeosine transglycosylase (InterPro:IPR002478); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT4G26600.1); Has 13569 Blast hits to 8411 proteins in 2331 species: Archae - 604; Bacteria - 9970; Metazoa - 826; Fungi - 418; Plants - 360; Viruses - 0; Other Eukaryotes - 1391 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0144eggNOG:KOG1122EMBL:AK227718EMBL:BT006450
EMBL:CP002684EnsemblPlants:AT1G06560EnsemblPlants:AT1G06560.1entrez:837167
Gene3D:2.30.130.10Gene3D:3.40.50.150GeneID:837167GO:GO:0003723
GO:GO:0008168Gramene:AT1G06560.1hmmpanther:PTHR22807hmmpanther:PTHR22807:SF34
HOGENOM:HOG000224258InterPro:IPR001678InterPro:IPR002478InterPro:IPR015947
InterPro:IPR018314InterPro:IPR023267InterPro:IPR029063KEGG:ath:AT1G06560
OMA:DGYIEEWPfam:PF01189Pfam:PF01472Pfscan:PS50890
Pfscan:PS51686PhylomeDB:Q84MA1PRINTS:PR02008PROSITE:PS01153
PROSITE:PS50890PROSITE:PS51686Proteomes:UP000006548RefSeq:NP_172143.3
scanprosite:PS01153SMART:SM00359SMR:Q84MA1STRING:3702.AT1G06560.1
SUPFAM:SSF53335SUPFAM:SSF88697TAIR:AT1G06560UniGene:At.48158
UniGene:At.71039UniProt:Q84MA1
Coordinates (TAIR10) chr1:+:2007660..2011824
Molecular Weight (calculated) 65516.20 Da
IEP (calculated) 7.03
GRAVY (calculated) -0.30
Length 599 amino acids
Sequence (TAIR10)
(BLAST)
001: MSKARVLLKP SSLTTCLTRA KAFFSSVSQS RSISHQMEMG PSDSERYCYD PVLRWNPEVE DYFTKAYGPD HFARISKALT RPSSYSCIRV NTVKTTSDAV
101: IEKLTKILND SEEGLKLVQP DGSSPVTKCQ IPGLDYVVFV NGSGPHKIEY DSGLENPPKE VLVSRKCAEA VLRGAQVYVP GVLACTAHVE KGDAVAVCVA
201: MEQPGDEGDW SVNMTRGTTL QGLPTDPYYR ERSGLYIGMG TAMLSRAGMF RVPNGIAVDL NHRVFRLPSL HNILEGEIFL QNLPSIIVAH ALDPQKGERI
301: LDMCAAPGGK TTAIAILMND EGEIVAADRS HNKVLVVQNL SAEMGFTCIT TCKLDALKSV CLPTTLNEST ILINGDNSSS MTSHSELSSN EEMTSVTSRR
401: SEADKSCEKN DSTEQPNGGD NVSQAYIRKN KGRLKNGRGR TQCQGGRAGK SQGFPPNSFD RVLLDAPCSA LGLRPRLFAG LETVVSLRNH GWYQRKMLDQ
501: AVQLVRVGGI LVYSTCTINP SENEAVVRYA LDKYRFLSLA PQHPRIGGPG LVGRCEFPDG YIEEWLKPGE EELVQKFDPS SELDTIGFFI AKFSVGPKD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)