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AT1G01920.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.617
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : SET domain-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
SET domain-containing protein; BEST Arabidopsis thaliana protein match is: Rubisco methyltransferase family protein (TAIR:AT1G14030.1); Has 611 Blast hits to 608 proteins in 165 species: Archae - 0; Bacteria - 0; Metazoa - 143; Fungi - 239; Plants - 164; Viruses - 0; Other Eukaryotes - 65 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410ISP7eggNOG:ENOG4111GHZEMBL:CP002684EnsemblPlants:AT1G01920
EnsemblPlants:AT1G01920.1entrez:839313ExpressionAtlas:F4HU79GeneID:839313
Gramene:AT1G01920.1hmmpanther:PTHR13271hmmpanther:PTHR13271:SF41InParanoid:F4HU79
InterPro:IPR001214ncoils:CoilOMA:VWEACGDPaxDb:F4HU79
Pfam:PF00856PhylomeDB:F4HU79PRIDE:F4HU79ProteinModelPortal:F4HU79
Proteomes:UP000006548RefSeq:NP_171694.3SMR:F4HU79STRING:3702.AT1G01920.1
SUPFAM:SSF82199TAIR:AT1G01920UniGene:At.42629UniProt:F4HU79
Coordinates (TAIR10) chr1:+:316204..319507
Molecular Weight (calculated) 64676.20 Da
IEP (calculated) 4.66
GRAVY (calculated) -0.28
Length 572 amino acids
Sequence (TAIR10)
(BLAST)
001: MAISEEEAKL ERFLDWLQVN GGELRGCNIK YSDSLKGFGI FASTSTQASD EVLLVVPLDL AITPMRVLQD PLLGPECQKM FEQGQVDDRF LMILFLTLER
101: LRINSSWKPY LDMLPTRFGN PLWFSDDDIL ELKGTNLYHA TELQKKKLLS LYHDKVEVLV TKLLILDGDS ESKVSFEHFL WANSVFWSRA LNIPLPHSFV
201: FPQSQDDTGE CTSTSESPET APVNSNEEKG KSLTSAQPAP SVGSGDTIWV EGLVPGIDFC NHDLKPVATW EVDGIGSVSR VPFSMYLLSV AQRPIPKKEI
301: SISYGNKGNE ELLYLYGFVI DNNPDDYLMI KEMLVNFVLT SVVTFNNGFI QVHYPVEAIP SIPFSDSKGQ LLEAQNAQLR CLLPKSVLNH GFFPRTTSVI
401: RESDEKETVR SCNFSWSGKR KMPTYMNKLV FPEDFMTGLR TIAMQEEEIY KVSAMLEELV ESRQGEQPSE TEVRMAVWEA CGDSGALQLL VDLLNSKMMK
501: LEENSGTEEQ DARLLEEACV LESHEESRDL DGRRMSRNKW SSVVYRRGQK QLTRLLLKEA EHALHLALSS DH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)