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AT3G07860.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.714
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Ubiquitin-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ubiquitin-like superfamily protein; BEST Arabidopsis thaliana protein match is: Ubiquitin-like superfamily protein (TAIR:AT5G25340.1); Has 145 Blast hits to 145 proteins in 50 species: Archae - 0; Bacteria - 0; Metazoa - 77; Fungi - 0; Plants - 65; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IW7FeggNOG:ENOG4111HGMEMBL:AC013483EMBL:BT002826
EMBL:BT014863EMBL:CP002686EnsemblPlants:AT3G07860EnsemblPlants:AT3G07860.1
entrez:819977GeneID:819977Genevisible:Q84WS8GO:GO:0005681
GO:GO:0006397GO:GO:0008380Gramene:AT3G07860.1hmmpanther:PTHR14942
HOGENOM:HOG000005690InParanoid:Q84WS8InterPro:IPR029071KEGG:ath:AT3G07860
KO:K13153OMA:WDNYCLTPaxDb:Q84WS8Pfam:Q84WS8
PhylomeDB:Q84WS8PRIDE:Q84WS8PRO:PR:Q84WS8ProteinModelPortal:Q84WS8
Proteomes:UP000006548Reactome:R-ATH-72165RefSeq:NP_187443.2SMR:Q84WS8
SUPFAM:SSF54236TAIR:AT3G07860UniGene:At.40289UniProt:Q84WS8
Coordinates (TAIR10) chr3:+:2507895..2508656
Molecular Weight (calculated) 18673.80 Da
IEP (calculated) 10.45
GRAVY (calculated) -0.45
Length 165 amino acids
Sequence (TAIR10)
(BLAST)
001: MESGDYDVET KREKLKSVLS QLLADPILAD VPRNPTLSDV VTLVSLEKGS AMRLSVVKLD GSSLDVAVMN SATLKDLKLL IKKKVNEMEQ ANMGHRHISW
101: KHVWSNFCLS CNNEKLLDDN AVLQDVGIRN NSQVTFMPYV MKKGRGRHSK RKKHRLFRSL HKTSS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)