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AT5G51540.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Zincin-like metalloproteases family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Zincin-like metalloproteases family protein; FUNCTIONS IN: metalloendopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: chloroplast thylakoid membrane, chloroplast; CONTAINS InterPro DOMAIN/s: Peptidase M3A/M3B, thimet/oligopeptidase F (InterPro:IPR001567); BEST Arabidopsis thaliana protein match is: Zincin-like metalloproteases family protein (TAIR:AT1G67690.1); Has 5499 Blast hits to 5482 proteins in 1556 species: Archae - 6; Bacteria - 3417; Metazoa - 330; Fungi - 489; Plants - 134; Viruses - 0; Other Eukaryotes - 1123 (source: NCBI BLink).
Protein Annotations
EC:3.4.24.59eggNOG:COG0339eggNOG:KOG2090EMBL:AB018109
EMBL:CP002688EnsemblPlants:AT5G51540EnsemblPlants:AT5G51540.1entrez:835228
Gene3D:1.10.1370.10Gene3D:1.20.1050.40Gene3D:3.40.390.10GeneID:835228
GO:GO:0004222GO:GO:0006518GO:GO:0009507GO:GO:0009535
GO:GO:0046872Gramene:AT5G51540.1hmmpanther:PTHR11804hmmpanther:PTHR11804:SF5
InParanoid:F4KDA5InterPro:IPR001567InterPro:IPR024077InterPro:IPR024079
InterPro:IPR024080KEGG:ath:AT5G51540KO:K01410MEROPS:M03.006
merops:M03.A04OMA:IIIDGLHPaxDb:F4KDA5Pfam:F4KDA5
Pfam:PF01432PRIDE:F4KDA5PRO:PR:F4KDA5PROSITE:PS00142
ProteinModelPortal:F4KDA5Proteomes:UP000006548RefSeq:NP_199967.2SMR:F4KDA5
STRING:3702.AT5G51540.1SUPFAM:SSF55486TAIR:AT5G51540UniGene:At.29673
UniProt:F4KDA5
Coordinates (TAIR10) chr5:+:20932071..20936284
Molecular Weight (calculated) 79928.90 Da
IEP (calculated) 6.87
GRAVY (calculated) -0.39
Length 706 amino acids
Sequence (TAIR10)
(BLAST)
001: MWKLTRRLQP HINSTRWLVR NFRNGGAGDA TGLYGFDHLK TAKGFQRFVA DAIERSGELV SYISGMPSSP EIIKAMDEIS DTVCCVVDSA ELCRQTHPDR
101: EFVEEANKAA IEMNDYLHHL NTNHTLYAAV KKAEQDSNLL TKEASRTAHH LRMDFERGGI HLDPEKLDKV NNLTTNIFQL CREFSENIAD DPGHVDIFPG
201: SRIPRHLHHL LNPTYRSTSG GSRGSTRSAH KSKQKGFRIN TDPRTVSSIL QWTSDEEVRK MVYIQGNSVP HANHGVLEKL IAARHELSQM MGCNSYADIM
301: VEPNLAKSPK VVTSFLQELS KTVKPKADEE FIAIRDFKRE KCGNPSAELE PWDETYYTSM MKSSINDVDT AVVASYFPLP QCIEGLKVLV ESLFGATFHT
401: IPLAPGESWH PNVVKLSLHH PDEGDLGYLY LDLYSRKGKY PGCASFAIRG GRKISETEYQ LPVIALVCNF SRACDSSIVK LNHSEVEVLF HEFGHALHSL
501: LSRTDYQHFS GTRVALDLAE MPSNLFEYYA WDYRLLKRFA RHYSTGETIP EKLVNSLQGA RNMFAATEMQ RQVFYALIDQ MLFGEQPETA RDVSHLVAEL
601: KRQHTSWNHV EGTHWYIRFS HLLNYGAGYY SYLYAKCFAS TIWQSICEED PLSLNTGTLL REKFFKHGGA KDPAELLTDL AGKEIISVHG EGIVPATTYL
701: LNELRL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)