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AT2G40700.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:22550958 (2012): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : P-loop containing nucleoside triphosphate hydrolases superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: helicase activity, ATP binding, ATP-dependent helicase activity, nucleic acid binding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEA(D/H)-box RNA helicase family protein (TAIR:AT5G65900.1); Has 40440 Blast hits to 37904 proteins in 2977 species: Archae - 739; Bacteria - 19708; Metazoa - 6217; Fungi - 4486; Plants - 2481; Viruses - 5; Other Eukaryotes - 6804 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-1220-MONOMEREC:3.6.4.13eggNOG:ENOG410XNT7eggNOG:KOG0348
EMBL:AJ010468EMBL:CP002685EnsemblPlants:AT2G40700EnsemblPlants:AT2G40700.1
entrez:818665Gene3D:3.40.50.300GeneID:818665Genevisible:Q7XJN0
GO:GO:0003723GO:GO:0004386GO:GO:0005524Gramene:AT2G40700.1
hmmpanther:PTHR24031hmmpanther:PTHR24031:SF248HOGENOM:HOG000268799InParanoid:Q7XJN0
InterPro:IPR001650InterPro:IPR011545InterPro:IPR014001InterPro:IPR014014
InterPro:IPR025313InterPro:IPR027417iPTMnet:Q7XJN0KEGG:ath:AT2G40700
KO:K14806ncoils:CoilOMA:WIVPGYVPaxDb:Q7XJN0
Pfam:PF00270Pfam:PF00271Pfam:PF13959Pfam:Q7XJN0
Pfscan:PS51192Pfscan:PS51194Pfscan:PS51195PhylomeDB:Q7XJN0
PIR:G84832PIR:T51746PRIDE:Q7XJN0PRO:PR:Q7XJN0
PROSITE:PS51192PROSITE:PS51194PROSITE:PS51195ProteinModelPortal:Q7XJN0
Proteomes:UP000006548RefSeq:NP_181602.1SMART:SM00487SMART:SM00490
SMART:SM01178SMR:Q7XJN0STRING:3702.AT2G40700.1SUPFAM:SSF52540
TAIR:AT2G40700UniGene:At.47UniProt:Q7XJN0
Coordinates (TAIR10) chr2:+:16976783..16979392
Molecular Weight (calculated) 68217.70 Da
IEP (calculated) 9.97
GRAVY (calculated) -0.39
Length 609 amino acids
Sequence (TAIR10)
(BLAST)
001: MKRAQQSARE TKQEAKDASK AKSGLFASCS FSSLGLDTKL SDQLKERMGF EAPTLVQAQA IPVILSGRDV LVNAPTGTGK TIAYLAPLIH HLQGHSPKVD
101: RSHGTFALVI VPTRELCLQV YETLEKLLHR FHWIVPGYVM GGEKKAKEKA RLRKGISILI ATPGRLLDHL KNTASFVHKN LRWVIFDEAD SILELGYGKE
201: IEQIIKLLGS GQNEQGEEDD IVPKGIQKQN LLLSATLNDK VNDLAKLSLD DPVMIGLDNT KLQQNLSIES PAAPDSDAED MVIHVNKSAN PLSEDYGIPS
301: QLVQRYLRVP CGARLVALLS VLKNLFEREA SQKVVVFFST RDAVDFHYSL LSEFQWPPNS ETEEEGTKEL FLKCKTFRLH GSMEQEDRRS AFGTFKTEKQ
401: AVLLSTDVAA RGLDFPKVRC IIQYDCPGEA TEYVHRVGRT ARIGEKGEAL LFLQPIEIDY LKELKKHGAS LTEYPLMKVL DKFPIPGNMP RIKKVLSLES
501: HPWVISLQRA LESLTYAEPK MKSLAKNAFV SWVRGYAAHK GELKSIFVVK KLHLGHVAKS FALREQPSLV GKSHHKETMK RKRDERQKGQ QGKKRKKMSG
601: TGNRSTQKT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)