AT1G07970.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
CONTAINS InterPro DOMAIN/s: Cytochrome B561-related, N-terminal (InterPro:IPR019176); Has 215 Blast hits to 213 proteins in 79 species: Archae - 0; Bacteria - 6; Metazoa - 131; Fungi - 22; Plants - 42; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:2469528..2472518 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 75721.70 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 10.05 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.35 | ||||||||||||||||||||||||||||
| Length | 693 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDSDVRRKIN NTTQGSSPSP KPSKFSVYRN PALAAASTAN SIRPSKSVLL FIFLLSIASA FSLISFMAGE KWLTNALTFG KISQEAAYVT VKAWQGLVTL 101: FCIGAMMALS KGISLHRAKF AARGETKSFS KETKDQFSLS NRQLELLGIK KKADQSVSEF PKSRPALKPA QSLEPLVPIH HQTLTGSAHK SSGGGDKLNS 201: RNGSQISSFS TPSKQMGSPS MYLVPSSSPV SSNRLSSGQD KAVSSPWSGR RSSAKDITTE EQLEQLLAEI DEKITESAGK MRTPPPTVGS FAMASPSTVG 301: GSTGASGATR STPLRPVRMS PGAQKFTTPP KKGEGDFPNP MSLERAIEGF IHLGVYPQIE DWRDRLRQWC SSVLLKPLLN KVETSHIQVM QTASKLGVNV 401: TVSQVGSDLP TNGTATTALP VDRTKGWQPS YSLDEDALLH QLRANLVQAI DASMQKLRTE NQQFQQQQQQ QQQQAALIPV MQECVDAISE HRRLQGLMKG 501: EWVKGLLPRS SIPADYTVQR IRALAEGTCV KNYEYNGGAD TREKNKKWSL EPPTDSHLLL YLFCAFLEHP KWMLHLDPSS YTGTQASKNP LFLGVLPPKE 601: RFPEKYIAVV SGVPSTLHPG ACVLAVDKQS PPTFALYWDK KVQFTLQGRT ALWDSMLLIC HRIKVGYGGV VRGMNLGSSA LNILQVVDSD TDD |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)