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AT4G17610.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
plasma membrane 0.974
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : tRNA/rRNA methyltransferase (SpoU) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
tRNA/rRNA methyltransferase (SpoU) family protein; FUNCTIONS IN: RNA binding, RNA methyltransferase activity; INVOLVED IN: RNA processing; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: tRNA/rRNA methyltransferase, SpoU (InterPro:IPR001537); Has 6630 Blast hits to 6614 proteins in 1865 species: Archae - 7; Bacteria - 4787; Metazoa - 103; Fungi - 50; Plants - 109; Viruses - 0; Other Eukaryotes - 1574 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0566eggNOG:KOG0839EMBL:CP002687EnsemblPlants:AT4G17610
EnsemblPlants:AT4G17610.1entrez:827480Gene3D:3.40.1280.10GeneID:827480
GO:GO:0003723GO:GO:0006396GO:GO:0008173Gramene:AT4G17610.1
hmmpanther:PTHR12029hmmpanther:PTHR12029:SF11InParanoid:F4JP86InterPro:IPR001537
InterPro:IPR016024InterPro:IPR029026InterPro:IPR029028KEGG:ath:AT4G17610
ncoils:CoilOMA:AIPREFTPaxDb:F4JP86Pfam:PF00588
PRIDE:F4JP86ProteinModelPortal:F4JP86Proteomes:UP000006548RefSeq:NP_193496.1
STRING:3702.AT4G17610.1SUPFAM:SSF48371SUPFAM:SSF75217TAIR:AT4G17610
UniGene:At.54378UniProt:F4JP86
Coordinates (TAIR10) chr4:-:9805652..9814910
Molecular Weight (calculated) 207940.00 Da
IEP (calculated) 6.59
GRAVY (calculated) -0.01
Length 1850 amino acids
Sequence (TAIR10)
(BLAST)
0001: MGSSVITSLS LSFKQVPPAA IPAFLDCVLS STGVSPSTLF ESLIEQFPFR LEDTVNGDKR FDSDDCNHIA SLVAGLCHLL KNFGFVAADN HNALQLFVWR
0101: VFIPLMKMVR AYDLDMLNKI VESFFDVVIE TNVLDMLGVS LVPFLLRSVG FSMGMRQHEE SDFIKWGDLC LRDSLNTIDM DENYIAQLSG SFPIPLSCHL
0201: LNLILNAAFQ SHQAAPKVES FAAGMLWDLC NTTERLLSQS VEHRSCAVSF LLPAIFKAFS SQSSLKISHQ GNLFILSRNG FIKRIWECCK KLFSVGSIER
0301: RDAYSVLSLC LSSGSWTDGT ESFVSEKDAV QFDLRSEQEF WDEIKIGLVV DESLVRKQSL HILKSVLSII EVSETISEKK PEGNSVNRSM TRKETWAEKE
0401: AKSLGVGELY GSVDSGLTSQ QGWQAFLLLY EMLEEYGTHL VEAAWSNQID LLIKSSLRYD GTLKSDCNNS HHGHMETPDE EAKIFNWLEV LWNRGFRHDN
0501: PLVRCTVMES FFGIEWRRYK TCTQSMSQTF VLGPFIEGLN DPTHHKDFGL KGIYTSRTIE GAAQYVSAYT SCLNPRNRVG FLINLASLAK KQSFCRAGFM
0601: ALVQCIVSTA YVVGGYGDKE MGHLEDKFSG TAQESSCGHL SQDDMTHILD VLKFVAESSR QHFNHKYRIR ASLTILNTLK FLLLIVLFHF LVYQKVLETA
0701: ASVVNPCNVP LGTLLQFVSA IPREFTDHDG LLRKMMLEWL QGCNRKTSNS LCTDGTRLLA SLYEYLKGFT SDNVESFDDE DLEAWDSQTK RWARVFFLMI
0801: NKEEHLTDII MFVQNNGLSF FQEKNHLKRA PAKFLIFILS MLLELQNMQD GISELSSSVK SKSGIGSDEQ TGKQIVVDAS SIKKKFAVVL LSILKELIPF
0901: ADSSCSIFWS HTTVENGALP GSVIGKLGGP SQRRLSVPTT TAVLEAVLSV KTIGLISSYC AQFTSGVGEL KLALAFFWKF TQHTISSQIC NSEAAAEIYL
1001: AAFEALASVL NAFVSLCSAG AFNLLENDST LLSMVDGEFW LQVSVPAFVR NINHLLTAGV LVRSRRAVLL SWKWLCVESL LSVMHILDAR RIPEDRKSFF
1101: SDDTVKSIFQ DIVESLENAG EGSALPMLKS VRLALGILAS GKSSLDGFSG VDTQTMWQLV KSCWILHISC KKRRVAPIAA LLSSVLHSSL FSNKDMHITE
1201: DEHGPLKWFV EKVLEEGQKS PRTIRLAALH LSGLWLMYPR TIKYYIKELR LLTLYGSVAF DEDFEAELSD NNDARTEVSL LAKSPDPELT ELFINTELYA
1301: RVSVAGLFQK LANLAYMVEP ASQNQDCQDA LVAGKLFLLE LLDAAVHDKD LAKELYKKYS AIHRRKIRAW QMICIMSRFV CNDIVGQVMD SVHICLHVSL
1401: QEQTERNNLP AVRQYLETFA INIYLKFPAL VKEQLVPILK NYDSKAQVNL RKTKMIVFAN VILHAEKIAQ QTHLRELLPP ILPLLTSHHH SLRGFAQLLV
1501: HRVLFRLFPP VESTSSHTIS LEKLSFENLK SYLDKNPDCS RLRASMEGFL DAYDPSTSAT PAGVFVNRVE ESEFECVPTC LMDNVLSFLN DVREDLRASM
1601: AKDVVTIKNE GFKIDEEPKR RLIMSTTDEE RLSEPSSLDF QRKITLSKHE KQDASSTSVL RNGETYKRLF EMEKEDELVT QLLRSRSMEV ERLKSGRQSL
1701: ILVASLVDRI PNLAGLARTC EVFKASSLAV ADASIIHDKQ FQLISVTAEK WVPIMEVPVN SLKLFLEKKK REGFSILGLE QTANSVSLDK YQFPKKTVLV
1801: LGREKEGIPV DIIHILDACI EIPQLGVVRS LNVHVSGAIA LWEYTRQQRI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)